From 1975ed7a701676a12297ea5efedf033964084e38 Mon Sep 17 00:00:00 2001
From: Koen Bossers <61537771+koenbossers@users.noreply.github.com>
Date: Tue, 17 Oct 2023 17:30:56 +0200
Subject: [PATCH] nf-test for module sourmash/sketch (#4104)

* nf-test for module sourmash/sketch

* add "sourmash" and "sourmash/sketch" tags

Co-authored-by: Sateesh_Peri <33637490+sateeshperi@users.noreply.github.com>

---------

Co-authored-by: Sateesh_Peri <33637490+sateeshperi@users.noreply.github.com>
---
 .../sourmash/sketch/tests/main.nf.test        | 36 +++++++++++++++++++
 .../sourmash/sketch/tests/main.nf.test.snap   | 33 +++++++++++++++++
 .../nf-core/sourmash/sketch/tests/tags.yml    |  2 ++
 tests/config/pytest_modules.yml               |  4 ---
 4 files changed, 71 insertions(+), 4 deletions(-)
 create mode 100644 modules/nf-core/sourmash/sketch/tests/main.nf.test
 create mode 100644 modules/nf-core/sourmash/sketch/tests/main.nf.test.snap
 create mode 100644 modules/nf-core/sourmash/sketch/tests/tags.yml

diff --git a/modules/nf-core/sourmash/sketch/tests/main.nf.test b/modules/nf-core/sourmash/sketch/tests/main.nf.test
new file mode 100644
index 00000000000..d638d6d1132
--- /dev/null
+++ b/modules/nf-core/sourmash/sketch/tests/main.nf.test
@@ -0,0 +1,36 @@
+nextflow_process {
+
+    name "Test Process SOURMASH_SKETCH"
+    script "../main.nf"
+    process "SOURMASH_SKETCH"
+    tag "sourmash"
+    tag "sourmash/sketch"
+    tag "modules"
+    tag "modules_nfcore"
+
+    test("Should run without failures") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+            process {
+                """
+                input[0] =  [
+                                [ id:'test', single_end:false ], // meta map
+                                file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
+                            ]
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+
+    }
+
+}
diff --git a/modules/nf-core/sourmash/sketch/tests/main.nf.test.snap b/modules/nf-core/sourmash/sketch/tests/main.nf.test.snap
new file mode 100644
index 00000000000..3af6b436ba6
--- /dev/null
+++ b/modules/nf-core/sourmash/sketch/tests/main.nf.test.snap
@@ -0,0 +1,33 @@
+{
+    "Should run without failures": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.sig:md5,c23a5a251d2b6babba8ae0e3905e8d04"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,f9e858fd5c324fb5b555824d698b90a8"
+                ],
+                "signatures": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.sig:md5,c23a5a251d2b6babba8ae0e3905e8d04"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,f9e858fd5c324fb5b555824d698b90a8"
+                ]
+            }
+        ],
+        "timestamp": "2023-10-17T15:03:34.724011196"
+    }
+}
\ No newline at end of file
diff --git a/modules/nf-core/sourmash/sketch/tests/tags.yml b/modules/nf-core/sourmash/sketch/tests/tags.yml
new file mode 100644
index 00000000000..92ad1525eb2
--- /dev/null
+++ b/modules/nf-core/sourmash/sketch/tests/tags.yml
@@ -0,0 +1,2 @@
+sourmash/sketch:
+  - modules/nf-core/sourmash/sketch/**
diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
index e027f8c8ce4..6405f2881d3 100644
--- a/tests/config/pytest_modules.yml
+++ b/tests/config/pytest_modules.yml
@@ -3655,10 +3655,6 @@ sourmash/index:
   - modules/nf-core/sourmash/index/**
   - tests/modules/nf-core/sourmash/index/**
 
-sourmash/sketch:
-  - modules/nf-core/sourmash/sketch/**
-  - tests/modules/nf-core/sourmash/sketch/**
-
 sourmash/taxannotate:
   - modules/nf-core/sourmash/taxannotate/**
   - tests/modules/nf-core/sourmash/taxannotate/**