From a207607307d8f37f6b906874abc1a8a66e432b9d Mon Sep 17 00:00:00 2001 From: Kristian Ullrich Date: Thu, 28 Mar 2024 22:28:24 +0100 Subject: [PATCH] # gitlab.ci --- .gitlab-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index c695f76..3dd790b 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -2,7 +2,7 @@ image: rocker/r-devel:latest before_script: - apt-get update - - apt-get -y install libcurl4-openssl-dev libssl-dev libxml2-dev libglu1-mesa-dev libssh2-1-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libgit2-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev pandoc r-cran-devtools r-cran-testthat r-cran-curl r-bioc-biostrings + - apt-get -y install pandoc r-cran-devtools r-cran-testthat r-cran-curl r-bioc-biostrings - R -e "dir(); getwd(); sessionInfo(); install.packages('pkgdown'); devtools::install()" - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('unzip last-1542.zip')); setwd(paste0(find.package('CRBHits'), '/extdata/last-1542/')); system('make')" - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('tar -xvf KaKs_Calculator2.0_src.tar.gz')); setwd(paste0(find.package('CRBHits'), '/extdata/KaKs_Calculator2.0_src/src/')); system('make clean'); system('make')"