It is probably appropriate to start this section with a warning: Windows is not the easiest environment in which to work with the Gadgetron. As indicated in [List of Dependencies], the Gadgetron relies on multiple external libraries. Many of those libraries are not available as easy install packages and must be compiled separately. If you are uncomfortable setting up development tools on Windows, or if you are just looking for a fast and easy way to get started with the Gadgetron, we recommend installing on Ubuntu Linux - possibly using a virtual machine inside Windows (see [Linux Installation]).
The following is a list of steps we have used to install the Gadgetron on a clean Windows 7 (64-bit) machine.
For the 32 bit windows: we do not test the Gadgetron on 32bit windows anymore, since 32bit windows is obsolete in most cases.
Download Cuda drivers/toolkit from from http://developer.nvidia.com/cuda/cuda-downloads.
Install CUDA 5.5 (e.g. cuda_5.5.20_winvista_win7_win8_general_64.exe)
Install cula_dense_free_R16a-windows.exe from http://www.culatools.com/downloads/dense.
Assuming CULA was installed in C:\Program Files\CULA\R16, add C:\Program Files\CULA\R16\bin64 to your PATH environment variable.
Install FFTW3 (http://www.fftw.org/install/windows.html)
Copy FFTW3 binaries to C:\Libraries\FFTW3.
Create .lib files, on the command line type:
c:\Libraries\FFTW3>lib /machine:x64 /def:libfftw3f-3.def
c:\Libraries\FFTW3>lib /machine:x64 /def:libfftw3-3.def
c:\Libraries\FFTW3>lib /machine:x64 /def:libfftw3l-3.def
Add C:\Libraries\FFTW3 to your PATH environment variable.
On 32 bit Windows remember to remove the /machine:x64 argument, the default is 32 bit.
Install ACE (http://download.dre.vanderbilt.edu/)
Unpack ACE into C:\\Libraries\\ACE-6.2.0\\ACE_wrappers
Add config.h in ACE_ROOT/ace/ with the following content:
//We are on Windows
#include "ace/config-win32.h"
//This ensured that INLINE settings
//do not vary between Debug and Release modes
#define ACE_NO_INLINE
Open the VS 2010 project in the source code archive
Set build type to Release/x64
Build (this takes a while)
Add to PATH environment variable: C:\Libraries\ACE-6.2.0\ACE_wrappers\lib
Regrettably, the off-the-shelf Python header files cannot be compiled in debug mode on Windows. This enforces the Gadgetron framework to be compiled in release mode only if you enable the Python components.
Install python-2.7.6.amd64.msi (http://www.python.org)
Add install folder (e.g. C:\Python27) to PATH environment variable
Add PYTHON_ROOT environment variable
From http://www.lfd.uci.edu/~gohlke/pythonlibs/ download and
Install the following (+ additional libraries that you may need for your Python development):
numpy-MKL-1.7.2.win-amd64-py2.7scipy-0.13.2.win-amd64-py2.7libxml2-python-2.9.1.win-amd64-py2.7
Optionally, install MKL http://software.intel.com/en-us/intel-mkl
Purchase and install MKL to 'C:\Program Files (x86)\Intel\Composer XE 2013 SP1'
Add
`C:\Program Files (x86)\Intel\Composer XE 2013 SP1\redist\intel64\mkl;C:\Program Files (x86)\Intel\Composer XE 2013 SP1\redist\intel64\compiler`
to your PATH environment variable.
Download acml4.4.0-win64.exe from: http://developer.amd.com/downloads/acml4.4.0-win64.exe
Install Library in say C:\Libraries\acml4.4.0
Add
`C:\Libraries\acml4.4.0\win64\lib;C:\Libraries\acml4.4.0\win64_mp\lib`
to your PATH environment variable.
Notice. Newer versions of the ACML-library are available (version 5.2.0 at the time of preparing this manual) - however, these libraries are distributed without required dependencies and will not work out of the box. We recommend sticking to the earlier version 4.4.0 until these issues have been resolved.
##Install the newest Boost release (http://www.boost.org)
We recommend using the precompiled binaries from BoostPro (e.g http://boostpro.com/download/x64/boost_1_51_setup.exe)
Just install everything, you might need other components later.
Alternatively, if you want to compile the latest boost http://www.boost.org/users/history/version_1_55_0.html
Download boost_1_55_0.zip to 'C:\Libraries\boost' and unzip this package to 'C:\Libraries\boost\boost_1_55_0'.
Open an windows command window and
cd C:\Libraries\boost\boost_1_55_0
bootstrap
b2 address-model=64 --build-type=complete stage
The boost will be compiled and staged at 'C:\Libraries\boost\boost_1_55_0\stage\lib'.
Add C:\Libraries\boost\boost_1_55_0\stage\lib' to your PATH environment variable.`
##Install git (if you are using source code management):
Run the newest installation package named something like Git-*-preview*.exe from: http://code.google.com/p/msysgit/
Use run in git bash only option
Use checkout Windows LF and commit Unix Line feeds
##Install CMake (http://www.cmake.org/cmake/resources/software.html)
Install the latest release (e.g. cmake-2.8.12.1-win32-x86.exe)
##Install HDF5:
You will need the HDFView application to view data files used by the Gadgetron, it can be downloaded rom http://www.hdfgroup.org/HDF5/ install HDFView : hdfview_install_win64.exe
The precompiled binaries (e.g. hdf5-1.8.12-win64-vs10shared.zip http://www.hdfgroup.org/HDF5/release/obtain5.html) should work fine with the Gadgetron. Remember to add the path (e.g. C:\Program Files\HDF Group\HDF5\1.8.12\bin) to the HDF libraries to your PATH environment library.
##Install CodeSynthesis XSD (http://www.codesynthesis.com/download/xsd/3.3/windows/i686/xsd-3.3.msi).
Remember to add the path to the XSD binaries to your PATH environment variable. E.g. C:\Program Files (x86)\CodeSynthesis XSD 3.3\bin\ and C:\Program Files (x86)\CodeSynthesis XSD 3.3\bin64\.
##Download, compile, and install the ISMRM Raw Data format.
Detailed instructions are available at (http://ismrmrd.github.io).
From a git bash shell:
cd C:\Libraries
git clone git://git.code.sf.net/p/ismrmrd/code ismrmrd-code
cd ismrmrd-code/
mkdir build
cd build/
cmake-gui.exe
Last command will open CMake's graphical user interface. Hit the configure button and deal with the dependencies that CMake is unable to find. Hit configure again and repeat the process until CMake has enough information to configure. Once the configuration is complete, you can hit generate to generate a Visual Studio project, which you can open and use to build ISMRMRD.
A few CMAKE variables are needed:
BOOST_ROOT=C:/Libraries/boost/boost_1_55_0
XSD_EXECUTABLE=C:/Program Files (x86)/CodeSynthesis XSD 3.3/bin/xsd.exe
XSD_INCLUDE_DIR=C:/Program Files (x86)/CodeSynthesis XSD 3.3/include
HDF5_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/cmake/hdf5
HDF5_CXX_LIBRARY=C:/Program Files/HDF Group/HDF5/1.8.12/lib/hdf5_cppdll.lib
HDF5_C_LIBRARY=C:/Program Files/HDF Group/HDF5/1.8.12/lib/hdf5dll.lib
HDF5_C_INCLUDE_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/include
HDF5_CXX_INCLUDE_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/include
FFTW3F_LIBRARY=C:/Libraries/FFTW3/libfftw3f-3.lib
FFTW3_INCLUDE_DIR=C:/Libraries/FFTW3
XERCESC_INCLUDE_DIR=C:/Program Files (x86)/CodeSynthesis XS D3.3/include/xercesc
XERCESC_LIBRARIES=C:/Program Files (x86)/CodeSynthesis XSD 3.3/lib64/vc-10.0/xerces-c_3.lib
Note: use the '/' instead of ''
The directory to install ISMRMRD is 'C:/Libraries/install/ismrmrd'.
Remember to add the path to the ISMRMRD to your PATH environment variable. E.g. C:/Libraries/install/ismrmrd/bin and `C:/Libraries/install/ismrmrd/lib'.
If your working folder is the same as 'C:/Libraries', the following CMake command line can be used to generate the visual studio solution:
cmake "-G" "Visual Studio 10 Win64" "-DBOOST_ROOT=C:/Libraries/boost/boost_1_55_0" "-DHDF5_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/cmake/hdf5" "-DHDF5_CXX_LIBRARY=C:/Program Files/HDF Group/HDF5/1.8.12/lib/hdf5_cpp.lib" "-DHDF5_C_LIBRARY=C:/Program Files/HDF Group/HDF5/1.8.12/lib/hdf5.lib" "-DHDF5_C_INCLUDE_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/include" "-DHDF5_CXX_INCLUDE_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/include" "-DFFTW3_INCLUDE_DIR=C:/Libraries/FFTW3" "-DFFTW3F_LIBRARY=C:/Libraries/FFTW3/libfftw3f-3.lib" "-DXERCESC_INCLUDE_DIR=C:/Program Files (x86)/CodeSynthesis XSD 3.3/include/xercesc" "-DXERCESC_LIBRARIES=C:/Program Files (x86)/CodeSynthesis XSD 3.3/lib64/vc-10.0/xerces-c_3.lib" "-DXSD_EXECUTABLE=C:/Program Files (x86)/CodeSynthesis XSD 3.3/bin/xsd.exe" "-DXSD_INCLUDE_DIR=C:/Program Files (x86)/CodeSynthesis XSD 3.3/include" "-DCMAKE_INSTALL_PREFIX=C:/Libraries/install" "C:/Libraries/ismrmrd-code"
##Download and compile the Google Test if you want to use the unit test framework. https://code.google.com/p/googletest/downloads/detail?name=gtest-1.7.0.zip
Unzip the gtest-1.7.0.zip to C:/Libraries/gtest-1.7.0
cd C:/Libraries/gtest-1.7.0
mkdir vc10
cd vc10
cmake-gui.exe
set the 'Where is the source code' as 'C:/Libraries/gtest-1.7.0' set the 'Where to build the binaries' as 'C:/Libraries/gtest-1.7.0/vc10'
Hit configure Check cmake option 'BUILD_SHARED_LIBS', 'gtest_force_shared_crt', 'gtest_disable_pthreads' Hit configure Hit Generate
Then in the C:/Libraries/gtest-1.7.0/vc10, open the visual studio solution 'gtest.sln', compile both Debug and Release version.
##Download, compile and install the Armadillo C++ linear algebra library http://arma.sourceforge.net/download.html.
unzip the armadillo-4.000.2.tar.gz to C:/Libraries/armadillo-4.000.2
cd C:/Libraries/armadillo-4.000.2
mkdir vc10
cd vc10
cmake-gui.exe
Set the 'Where is the source code' as 'C:/Libraries/armadillo-4.000.2' Set the 'Where to build the binaries' as 'C:/Libraries/armadillo-4.000.2/vc10' In the C:/Libraries/armadillo-4.000.2/include/armadillo_bits, find the config.hpp file and uncomment
//#define ARMA_USE_LAPACK
//#define ARMA_USE_BLAS
//#define ARMA_USE_WRAPPER
//#define ARMA_BLAS_LONG_LONG
Set CMAKE_INSTALL_PREFIX=C:/Libraries/armadillo-4.000.2/install Hit configure If the Intel MKL is installed, set:
mkl_LIBRARY=C:/Program Files (x86)/Intel/Composer XE 2013 SP1/mkl/lib/intel64/mkl_core.lib
mkl_core_LIBRARY=C:/Program Files (x86)/Intel/Composer XE 2013 SP1/mkl/lib/intel64/mkl_core.lib
mkl_intel_lp64_LIBRARY=C:/Program Files (x86)/Intel/Composer XE 2013 SP1/mkl/lib/intel64/mkl_intel_ilp64.lib
mkl_intel_thread_LIBRARY=C:/Program Files (x86)/Intel/Composer XE 2013 SP1/mkl/lib/intel64/mkl_intel_thread.lib
mkl_lapack_LIBRARY=C:/Program Files (x86)/Intel/Composer XE 2013 SP1/mkl/lib/intel64/mkl_lapack95_ilp64.lib
Since the 64bit windows is assumed to be used here, to handle the array size bigger than 4GB, the ilp64 interface of MKL should be used. For more information, please check http://software.intel.com/sites/products/documentation/hpc/mkl/lin/MKL_UG_structure/Support_for_ILP64_Programming.htm
Hit configure Hit Generate
Then in the C:/Libraries/armadillo-4.000.2/vc10, open the visual studio solution 'armadillo.sln', compile and install the Release version.
In the C:/Libraries/armadillo-4.000.2/install/include/armadillo_bits/config.hpp, uncomment #define ARMA_BLAS_LONG_LONG again. It is due to that the default config.hpp.cmake coming with the armadillo package disables the 64bit interface for BLAS and LAPACK.
Remember to add the path to your PATH environment variable. E.g. `C:/Libraries/armadillo-4.000.2/install/lib'.
##xsltproc
Download zlib-1.2.5.win32.zip, iconv-1.9.2.win32.zip, libxml2-2.7.8.win32.zip, libxslt-1.1.26.win32.zip from http://xmlsoft.org/sources/win32/
Unzip all these four packages and create C:/Libraries/xslt
Copy following files from the unzipped packages to C:/Libraries/xslt
iconv.dll
libexslt.dll
libxml2.dll
libxslt.dll
xsltproc.exe
zlib1.dll
Add the C:/Libraries/xslt' to your PATH` environment variable.
##Gadgetron
Download and unpack Gadgetron source code
Assume the gadgetron is put into C:/Libraries/gadgetron
Create Visual Studio project (your process may vary):
Start cmake-gui
Select source (C:/Libraries/gadgetron) and target directories (C:/Libraries/gadgetron/build`)
Hit configure (first time) -- "ok" the dialogue box.
Add PATH variable BOOST_ROOT to point to BOOST folder (use GUI button "+Add Entry" to do this)
In our example, BOOST_ROOT=C:/Libraries/boost/boost_1_55_0
Hit configure (again)
Specify location of FFTW and FFTWf libraries
FFTW3F_LIBRARY=C:/Libraries/FFTW3/libfftw3f-3.lib
FFTW3_INCLUDE_DIR=C:/Libraries/FFTW3
FFTW3_LIBRARY=C:/Libraries/FFTW3/libfftw3-3.lib
Specify location of CULA
CULA_CORE_LIBRARY=C:/Program Files/CULA/R16/lib64/cula_core.lib
CULA_INCLUDE_DIR=C:/Program Files/CULA/R16/include
CULA_LAPACK_BASIC_LIBRARY=C:/Program Files/CULA/R16/lib64/cula_lapack.lib
CULA_LAPACK_LIBRARY=C:/Program Files/CULA/R16/lib64/cula_lapack.lib
CULA_LIBRARY=C:/Program Files/CULA/R16/lib64/cula_core.lib
Specify location of ACE
ACE_DEBUG_LIBRARY=C:/Libraries/ACE-6.2.0/ACE_wrappers/lib/ACEd.lib
ACE_INCLUDE_DIR=C:/Libraries/ACE-6.2.0/ACE_wrappers
ACE_LIBRARY=C:/Libraries/ACE-6.2.0/ACE_wrappers/lib/ACE.lib
Specify location of Armadillo
ARMADILLO_INCLUDE_DIR=C:/Libraries/armadillo-4.000.2/install/include
ARMADILLO_LIBRARY=C:/Libraries/armadillo-4.000.2/install/lib/armadillo.lib
Specify location of hdf5
HDF5_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/cmake/hdf5
HDF5_CXX_LIBRARY=C:/Program Files/HDF Group/HDF5/1.8.12/lib/hdf5_cppdll.lib
HDF5_C_LIBRARY=C:/Program Files/HDF Group/HDF5/1.8.12/lib/hdf5dll.lib
HDF5_C_INCLUDE_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/include
HDF5_CXX_INCLUDE_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/include
Specify location of xsd and xercesc
XSD_EXECUTABLE=C:/Program Files (x86)/CodeSynthesis XSD 3.3/bin/xsd.exe
XSD_INCLUDE_DIR=C:/Program Files (x86)/CodeSynthesis XSD 3.3/include
XERCESC_INCLUDE_DIR=C:/Program Files (x86)/CodeSynthesis XSD 3.3/include/xercesc
XERCESC_LIBRARIES=C:/Program Files (x86)/CodeSynthesis XSD 3.3/lib64/vc-10.0/xerces-c_3.lib
Specify location of ismrmrd
ISMRMRD_INCLUDE_DIR=C:/Program Files/ISMRMRD/ismrmrd/include
ISMRMRD_LIBRARIES=C:/Program Files/ISMRMRD/ismrmrd/lib/ismrmrd.lib
ISMRMRD_SCHEMA_DIR=C:/Program Files/ISMRMRD/ismrmrd/schema
ISMRMRD_XSD_INCLUDE_DIR=C:/Libraries/ismrmrd-code/build/src/xsd
ISMRMRD_XSD_SOURCE=C:/Libraries/ismrmrd-code/build/src/xsd/ismrmrd.cxx
Specify location of Google Test
GTEST_INCLUDE_DIRS:PATH=C:/Libraries/gtest-1.7.0/include
GTEST_LIBRARY=C:/Libraries/gtest-1.7.0/vc10/Release/gtest.lib
GTEST_LIBRARY_DEBUG=C:/Libraries/gtest-1.7.0/vc10/Debug/gtest.lib
GTEST_MAIN_LIBRARY=C:/Libraries/gtest-1.7.0/vc10/Release/gtest_main.lib
GTEST_MAIN_LIBRARY_DEBUG=C:/Libraries/gtest-1.7.0/vc10/Debug/gtest_main.lib
Specify location of Matlab
If you have matlab installed, the matlab wrapper mex files can be compiled: e.g., if the matlab is installed at C:\MATLAB\R2012b,
MATLAB_ENG_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libeng.lib
MATLAB_INCLUDE_DIR=C:/MATLAB/R2012b/extern/include
MATLAB_MAT_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libmat.lib
MATLAB_MEX_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libmex.lib
MATLAB_MX_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libmx.lib
MATLAB_UT_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libut.lib
Specify location of MKL
MKLROOT_PATH=C:/Program Files (x86)/Intel/Composer XE 2013 SP1
The FindMKL script shall find this path automatically. If your MKL is installed somewhere else, then specify it accordingly.
Hit configure (again)
Specify NUMPY_INCLUDE_DIRS = C:/Python27/Lib/site-packages/numpy/core/include
Hit configure (again)
Specify the following CMAKEFILEPATH variables if acml is used:
BLAS_acml_LIBRARY= \
C:/Libraries/acml4.4.0/win64/lib/libacml_dll.lib
BLAS_acml_mp_LIBRARY= \
C:/Libraries/acml4.4.0/win64_mp/lib/libacml_mp_dll.lib
Hit configure
Make sure that the HDF5_C_LIBRARY and HDF5_CXX_LIBRARY FILEPATH variables are set correctly (we have observed that they might be incorrectly set to point to the dll instead of the lib files by default).
Hit configure
cmake cached variables:
USE_OPENMP : if checked, the gadgetron will be compiled with OpenMP enabled
BUILD_TOOLBOX_STATIC: if checked, variant toolboxes in gadgetron will be compiled as static libraries
Hit generate
You should now have a visual studio project that you can open and build (try Release/x64 mode and try the install target). If you are lacking sufficient write permission to install in the default location, run Visual Studio as Administrator or change CMAKE_INSTALL_PREFIX to a folder to which you have write permissions. Notice that /gadgetron is automatically appended to the path you specify.
If your working folder is the same as 'C:/Libraries', the following CMake command line can be used to generate the visual studio solution:
cmake "-G" "Visual Studio 10 Win64" "-DBOOST_ROOT=C:/Libraries/boost/boost_1_55_0" "-DHDF5_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/cmake/hdf5" "-DHDF5_CXX_LIBRARY=C:/Program Files/HDF Group/HDF5/1.8.12/lib/hdf5_cpp.lib" "-DHDF5_C_LIBRARY=C:/Program Files/HDF Group/HDF5/1.8.12/lib/hdf5.lib" "-DHDF5_C_INCLUDE_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/include" "-DHDF5_CXX_INCLUDE_DIR=C:/Program Files/HDF Group/HDF5/1.8.12/include" "-DFFTW3_INCLUDE_DIR=C:/Libraries/FFTW3" "-DFFTW3F_LIBRARY=C:/Libraries/FFTW3/libfftw3f-3.lib" "-DFFTW3_LIBRARY=C:/Libraries/FFTW3/libfftw3-3.lib" "-DCULA_CORE_LIBRARY=C:/Program Files/CULA/R16/lib64/cula_core.lib" "-DCULA_INCLUDE_DIR=C:/Program Files/CULA/R16/include" "-DCULA_LAPACK_BASIC_LIBRARY=C:/Program Files/CULA/R16/lib64/cula_lapack.lib" "-DCULA_LAPACK_LIBRARY=C:/Program Files/CULA/R16/lib64/cula_lapack.lib" "-DCULA_LIBRARY=C:/Program Files/CULA/R16/lib64/cula_core.lib" "-DACE_DEBUG_LIBRARY=C:/Libraries/ACE-6.2.0/ACE_wrappers/lib/ACEd.lib" "-DACE_INCLUDE_DIR=C:/Libraries/ACE-6.2.0/ACE_wrappers" "-DACE_LIBRARY=C:/Libraries/ACE-6.2.0/ACE_wrappers/lib/ACE.lib" "-DARMADILLO_INCLUDE_DIR=C:/Libraries/armadillo-4.000.2/install/include" "-DARMADILLO_LIBRARY=C:/Libraries/armadillo-4.000.2/install/lib/armadillo.lib" "-DISMRMRD_INCLUDE_DIR=C:/Libraries/install/ismrmrd/include" "-DISMRMRD_LIBRARIES=C:/Libraries/install/ismrmrd/lib/ismrmrd.lib" "-DISMRMRD_SCHEMA_DIR=C:/Libraries/install/ismrmrd/schema" "-DISMRMRD_XSD_INCLUDE_DIR=C:/Libraries/ismrmrd-code/build/src/xsd" "-DISMRMRD_XSD_SOURCE=C:/Libraries/ismrmrd-code/build/src/xsd/ismrmrd.cxx" "-DGTEST_INCLUDE_DIRS:PATH=C:/Libraries/gtest-1.7.0/include" "-DGTEST_LIBRARY=C:/Libraries/gtest-1.7.0/vc10/Release/gtest.lib" "-DGTEST_LIBRARY_DEBUG=C:/Libraries/gtest-1.7.0/vc10/Debug/gtest.lib" "-DGTEST_MAIN_LIBRARY=C:/Libraries/gtest-1.7.0/vc10/Release/gtest_main.lib" "-DGTEST_MAIN_LIBRARY_DEBUG=C:/Libraries/gtest-1.7.0/vc10/Debug/gtest_main.lib" "-DMATLAB_ENG_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libeng.lib" "-DMATLAB_INCLUDE_DIR=C:/MATLAB/R2012b/extern/include" "-DMATLAB_MAT_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libmat.lib" "-DMATLAB_MEX_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libmex.lib" "-DMATLAB_MX_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libmx.lib" "-DMATLAB_UT_LIBRARY=C:/MATLAB/R2012b/extern/lib/win64/microsoft/libut.lib" "-DMKLROOT_PATH=C:/Program Files (x86)/Intel/Composer XE 2013 SP1" "-DXERCESC_INCLUDE_DIR=C:/Program Files (x86)/CodeSynthesis XSD 3.3/include/xercesc" "-DXERCESC_LIBRARIES=C:/Program Files (x86)/CodeSynthesis XSD 3.3/lib64/vc-10.0/xerces-c_3.lib" "-DXSD_EXECUTABLE=C:/Program Files (x86)/CodeSynthesis XSD 3.3/bin/xsd.exe" "-DXSD_INCLUDE_DIR=C:/Program Files (x86)/CodeSynthesis XSD 3.3/include" "-DSWIG_EXECUTABLE=C:/Libraries/swigwin-2.0.11/swig.exe" "-DCMAKE_INSTALL_PREFIX=C:/Libraries/install" "C:/Libraries/gadgetron"
Because the gadgetron is installed at 'C:/Libraries/install/gadgetron', GADGETRON_HOME therefore is 'C:/Libraries/install/gadgetron' in this example.
After compiling and installing, please rename the file GADGETRON_HOME/config/gadgetron.xml.example to GADGETRON_HOME/config/gadgetron.xml
Before attempting to run any reconstructions, please set the environment variable GADGETRON_HOME to point to the installation folder of your Gadgetron installation and make sure that the paths of all dependencies are in your PATH environment variable.
If your working directory is not 'C:/Libraries/', the compilation process should be changed accordingly.
You now have a working installation of the Gadgetron in Windows. Follow the instructions below to run a simple reconstruction example ([Gadgetron Hello World])