From 86d2ca27f902814a6ab4221e93908306d29779f9 Mon Sep 17 00:00:00 2001
From: Ali Khan <alik@robarts.ca>
Date: Mon, 9 May 2022 14:13:09 -0400
Subject: [PATCH] fix for removing ROI*.nii.gz files

---
 tar2bids | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/tar2bids b/tar2bids
index aecd2eb..6b5bfd4 100755
--- a/tar2bids
+++ b/tar2bids
@@ -468,6 +468,8 @@ done
 echo "  Adding default .bidsignore file..."
 cp -v $execpath/etc/bidsignore $output_dir/.bidsignore
 
+echo "  Removing _ROI#.nii.gz files (unused scale bars from qMRI)..."
+rm -vf $output_dir/sub*/*/*ROI[0-9].nii.gz $output_dir/sub*/ses*/*ROI[0-9].nii.gz 2> /dev/null
 
 echo "  Running bids-validator..."
 bids-validator $output_dir | tee  $validator_out