A comprehensive package for analysis of ribosome profilling data. Integrating Ribo-SEQ upstream and downstream analysis process from raw fastq data into ribosome density data. Making Ribo-SEQ analysis workflow more easier and concise for R users. Also supporting multiple kinds of visualization with Ribo quality checking and density tracks.
Please make sure you have installed julia and python first.
You can install the development version of RiboProfiler like so:
# install.packages("devtools")
devtools::install_github("junjunlab/RiboProfiler")
# or
remotes::install_github("junjunlab/RiboProfiler")
library(RiboProfiler)Jun Zhang (2023). RiboProfiler: Integrating Ribo-SEQ Upstream and Downstream Analysis. https://github.com/junjunlab/RiboProfiler