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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%>%")
export(adjust_offset)
export(bam_to_bw)
export(batch_adpator_remove)
export(batch_bam2bigwig)
export(batch_hisat_align)
export(batch_sam2bam)
export(bowtie2_align)
export(calculate_polarity)
export(call_cmd)
export(codon_occupancy)
export(codon_occupancy_plot)
export(codon_track_plot)
export(construct_ribosomeObj)
export(count_to_tpm)
export(enrichment_analysis)
export(enrichment_track_plot)
export(fetch_sequence)
export(fetch_trRNA_from_NCBI)
export(footprint_heatmap)
export(gene_anno2Ribominer)
export(gene_anno_extend)
export(get_counts_from_bam)
export(get_nomalized_counts)
export(get_pausing_site)
export(get_serp_plot_df)
export(get_track_df)
export(jj_theme)
export(load_rna_coverage)
export(load_selective_ribosome)
export(load_track_data)
export(metagene_plot)
export(metagene_profile)
export(peptide_motif_score)
export(peptide_motif_score2)
export(periodicity_check)
export(plot_mapinfo)
export(polarity_score_plot)
export(pre_gene_trans_density)
export(pre_longest_trans_info)
export(pre_qc_data)
export(pre_rna_coverage_data)
export(psite_offset_check)
export(qc_plot)
export(reference_index_build)
export(rel_dist_motif)
export(rel_dist_motif_plot)
export(rel_to_start_stop)
export(ribo_bam_to_bw)
export(ribosomeObj)
export(seq_frame_plot)
export(single_gene_plot)
export(single_gene_profile)
export(slide_window_average)
export(subdata)
export(trRNA_index_build)
export(track_plot)
export(transform_to_sparse_matrix)
export(triAmino_motif_plot)
export(triAmino_scater_plot)
export(whole_metagene_plot)
exportClasses(ribosomeObj)
exportMethods(adjust_offset)
exportMethods(calculate_polarity)
exportMethods(codon_occupancy)
exportMethods(codon_track_plot)
exportMethods(enrichment_analysis)
exportMethods(enrichment_track_plot)
exportMethods(fetch_sequence)
exportMethods(footprint_heatmap)
exportMethods(get_nomalized_counts)
exportMethods(get_pausing_site)
exportMethods(get_track_df)
exportMethods(metagene_plot)
exportMethods(peptide_motif_score)
exportMethods(peptide_motif_score2)
exportMethods(periodicity_check)
exportMethods(psite_offset_check)
exportMethods(qc_plot)
exportMethods(rel_dist_motif)
exportMethods(rel_to_start_stop)
exportMethods(single_gene_plot)
exportMethods(subdata)
import(dplyr)
import(ggplot2)
import(ggside)
import(purrr)
import(utils)
importFrom(GenomicAlignments,readGAlignmentPairs)
importFrom(GenomicAlignments,readGAlignments)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,coverage)
importFrom(JuliaCall,julia_eval)
importFrom(JuliaCall,julia_library)
importFrom(JuliaCall,julia_setup)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(ggh4x,facet_grid2)
importFrom(ggh4x,facet_nested)
importFrom(ggh4x,facetted_pos_scales)
importFrom(ggh4x,force_panelsizes)
importFrom(ggh4x,weave_factors)
importFrom(ggrepel,geom_text_repel)
importFrom(ggseqlogo,ggseqlogo)
importFrom(ggside,geom_xsidecol)
importFrom(ggside,geom_xsidesegment)
importFrom(ggside,geom_ysidecol)
importFrom(ggside,ggside)
importFrom(ggside,scale_xsidey_continuous)
importFrom(grid,grid.draw)
importFrom(grid,grid.ls)
importFrom(grid,grid.newpage)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(methods,new)
importFrom(reticulate,py_available)
importFrom(reticulate,py_config)
importFrom(reticulate,py_install)
importFrom(reticulate,py_module_available)
importFrom(reticulate,source_python)
importFrom(reticulate,use_python)
importFrom(rlang,ensyms)
importFrom(rlang,sym)
importFrom(rlang,syms)
importFrom(rtracklayer,export.bw)
importFrom(rtracklayer,export.gff)
importFrom(rtracklayer,import.gff)
importFrom(scales,label_math)
importFrom(stats,fft)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,quantile)
importFrom(utils,packageDescription)
importFrom(zplyr,geom_abs_text)