environment.yaml

name: larval_gonad
channels:
  - conda-forge
  - bioconda
  - defaults
  - lcdb
  - jfear
dependencies:
  - _libgcc_mutex=0.1
  - aioeasywebdav=2.2.0
  - aiohttp=3.5.4
  - appdirs=1.4.3
  - argcomplete=1.9.4
  - argh=0.26.2
  - arrow-cpp=0.14.1
  - asn1crypto=0.24.0
  - astroid=2.2.5
  - async-timeout=3.0.1
  - atomicwrites=1.3.0
  - attrs=19.1.0
  - backcall=0.1.0
  - bcftools=1.9
  - bcrypt=3.1.6
  - bedtools=2.28.0
  - biopython=1.74
  - black=19.3b0
  - bleach=3.1.0
  - blosc=1.17.0
  - boost-cpp=1.70.0
  - boto3=1.9.166
  - botocore=1.12.166
  - brotli=1.0.7
  - bzip2=1.0.6
  - c-ares=1.15.0
  - ca-certificates=2019.6.16
  - cachetools=2.1.0
  - cairo=1.16.0
  - certifi=2019.6.16
  - cffi=1.12.3
  - chardet=3.0.4
  - click=7.0
  - configargparse=0.13.0
  - cryptography=2.7
  - curl=7.64.1
  - cycler=0.10.0
  - datrie=0.7.1
  - dbus=1.13.6
  - decorator=4.4.0
  - defusedxml=0.5.0
  - docutils=0.14
  - double-conversion=3.1.5
  - dropbox=9.3.0
  - entrypoints=0.3
  - et_xmlfile=1.0.1
  - expat=2.2.5
  - feather-format=0.4.0
  - filechunkio=1.8
  - fontconfig=2.13.1
  - freetype=2.10.0
  - ftputil=3.4
  - gettext=0.19.8.1
  - gffutils=0.9
  - gflags=2.2.2
  - gitdb2=2.0.5
  - gitpython=2.1.11
  - glib=2.58.3
  - glog=0.4.0
  - goatools=1.0.5
  - google-api-core=1.11.0
  - google-auth=1.6.3
  - google-cloud-core=1.0.1
  - google-cloud-storage=1.16.1
  - google-resumable-media=0.3.2
  - googleapis-common-protos=1.6.0
  - graphite2=1.3.13
  - graphviz=2.38.0
  - grpc-cpp=1.23.0
  - gseapy=0.9.18
  - gst-plugins-base=1.14.5
  - gstreamer=1.14.5
  - harfbuzz=2.4.0
  - hdf5=1.10.5
  - htslib=1.9
  - icu=58.2
  - idna=2.8
  - idna_ssl=1.1.0
  - importlib_metadata=0.18
  - ipdb=0.12.2
  - ipykernel=5.1.1
  - ipython=7.5.0
  - ipython_genutils=0.2.0
  - ipywidgets=7.5.1
  - isort=4.3.21
  - jdcal=1.4.1
  - jedi=0.15.1
  - jinja2=2.10.1
  - jmespath=0.9.4
  - joblib=0.13.2
  - jpeg=9c
  - jsonschema=3.0.1
  - jupyter=1.0.0
  - jupyter_client=5.3.1
  - jupyter_console=6.0.0
  - jupyter_core=4.4.0
  - kiwisolver=1.1.0
  - krb5=1.16.3
  - lazy-object-proxy=1.4.2
  - lcdblib=0.1.3.post
  - libblas=3.8.0
  - libcblas=3.8.0
  - libcurl=7.64.1
  - libdeflate=1.0
  - libedit=3.1.20170329
  - libevent=2.1.10
  - libffi=3.2.1
  - libgcc-ng=9.1.0
  - libgfortran-ng=7.3.0
  - libiconv=1.15
  - liblapack=3.8.0
  - libpng=1.6.37
  - libprotobuf=3.8.0
  - libsodium=1.0.17
  - libssh2=1.8.2
  - libstdcxx-ng=9.1.0
  - libtiff=4.0.10
  - libtool=2.4.6
  - libuuid=2.32.1
  - libxcb=1.13
  - libxml2=2.9.9
  - lz4-c=1.8.3
  - lzo=2.10
  - markupsafe=1.1.1
  - matplotlib=3.1.0
  - matplotlib-base=3.1.0
  - mccabe=0.6.1
  - mistune=0.8.4
  - mock=3.0.5
  - more-itertools=4.3.0
  - multidict=4.5.2
  - munch=2.3.2
  - nbconvert=5.6.0
  - nbformat=4.4.0
  - ncurses=6.1
  - networkx=2.3
  - notebook=6.0.1
  - numexpr=2.7.0
  - numpy=1.17.1
  - openblas=0.3.6
  - openpyxl=2.6.2
  - openssl=1.1.1c
  - packaging=19.0
  - pandas=0.25.1
  - pandoc=2.7.3
  - pandocfilters=1.4.2
  - pango=1.40.14
  - paramiko=2.5.0
  - parquet-cpp=1.5.1
  - parso=0.5.1
  - patsy=0.5.1
  - pcre=8.41
  - pexpect=4.7.0
  - pickleshare=0.7.5
  - pip=19.1.1
  - pixman=0.34.0
  - pluggy=0.12.0
  - prettytable=0.7.2
  - prometheus_client=0.7.1
  - prompt_toolkit=2.0.9
  - protobuf=3.8.0
  - psutil=5.6.3
  - pthread-stubs=0.4
  - ptyprocess=0.6.0
  - py=1.8.0
  - pyarrow=0.14.1
  - pyasn1=0.4.5
  - pyasn1-modules=0.2.5
  - pybedtools=0.8.0
  - pycparser=2.19
  - pyfaidx=0.5.5.2
  - pygments=2.4.2
  - pygraphviz=1.5
  - pylint=2.3.1
  - pynacl=1.3.0
  - pyopenssl=19.0.0
  - pyparsing=2.4.0
  - pyqt=5.9.2
  - pyrsistent=0.15.2
  - pysam=0.15.2
  - pysftp=0.2.9
  - pysocks=1.7.0
  - pytables=3.5.2
  - pytest=4.6.3
  - pytest-runner=5.1
  - python=3.6.7
  - python-dateutil=2.8.0
  - python-irodsclient=0.7.0
  - pytz=2019.1
  - pyyaml=5.1.1
  - pyzmq=18.0.2
  - qt=5.9.7
  - qtconsole=4.5.4
  - ratelimiter=1.2.0
  - re2=2019.08.01
  - readline=7.0
  - requests=2.22.0
  - rsa=3.4.2
  - s3transfer=0.2.1
  - samtools=1.9
  - scikit-learn=0.21.2
  - scipy=1.3.1
  - seaborn=0.9.0
  - send2trash=1.5.0
  - setuptools=41.0.1
  - simplejson=3.16.1
  - sip=4.19.8
  - six=1.12.0
  - smmap2=2.0.5
  - snakemake=5.5.0
  - snakemake-minimal=5.5.0
  - snappy=1.1.7
  - sqlite=3.28.0
  - statsmodels=0.10.1
  - svgutils=0.3.1
  - tabulate=0.8.3
  - terminado=0.8.2
  - testpath=0.4.2
  - thrift-cpp=0.12.0
  - tk=8.6.9
  - toml=0.10.0
  - tornado=6.0.2
  - traitlets=4.3.2
  - typed-ast=1.4.0
  - typing_extensions=3.7.2
  - uriparser=0.9.3
  - urllib3=1.24.3
  - wcwidth=0.1.7
  - webencodings=0.5.1
  - wheel=0.33.4
  - widgetsnbextension=3.5.1
  - wrapt=1.11.1
  - xlrd=1.2.0
  - xmlrunner=1.7.7
  - xorg-kbproto=1.0.7
  - xorg-libice=1.0.9
  - xorg-libsm=1.2.3
  - xorg-libx11=1.6.7
  - xorg-libxau=1.0.9
  - xorg-libxdmcp=1.1.3
  - xorg-libxext=1.3.4
  - xorg-libxpm=3.5.12
  - xorg-libxrender=0.9.10
  - xorg-libxt=1.1.5
  - xorg-renderproto=0.11.1
  - xorg-xextproto=7.3.0
  - xorg-xproto=7.0.31
  - xz=5.2.4
  - yaml=0.1.7
  - yarl=1.3.0
  - zeromq=4.3.2
  - zipp=0.5.1
  - zlib=1.2.11
  - zstd=1.4.0
prefix: /home/fearjm/miniconda3/envs/larval_gonad