site.config.json

{
  "site_name": "ShareLoc.XYZ",
  "site_icon": "🔬",
  "site_logo": "/static/img/shareloc-logo-white.svg",
  "author": "IMOD",
  "keywords": "SMLM,PALM,STORM,PAINT,SR,SuperRes,Super resolution,Microscopy,Live Cell Imaging,Bioimaging",
  "description": "ShareLoc--An open platform for sharing single-molecule localization microscopy data and tools",
  "twitter_site": "@ImodLab",
  "twitter_creator": "@weioyang",
  "twitter_image": "https://shareloc.xyz/static/img/shareloc-banner.png",
  "og_url": "https://shareloc.xyz",
  "og_title": "ShareLoc.XYZ",
  "og_image": "https://shareloc.xyz/static/img/shareloc-banner.png",
  "og_description": "An open platform for sharing single-molecule localization microscopy data and tools",
  "background_image": "",
  "builtin_manifest_url": "./shareloc.manifest.json",
  "manifest_url": "https://hypha.aicell.io/shareloc-xyz/artifacts/shareloc-collection",
  "explore_button_text": "🚀 Explore",
  "subscribe_url": "https://docs.google.com/forms/d/e/1FAIpQLSfQhTjXOuTXZNtalprbsXMPd4ct2ydiMhlPc2lhcs6WY4yo0w/viewform?embedded=true",
  "contribute_url": "/docs/contribute.md",
  "hypha_server_url": "https://hypha.aicell.io",
  "join_partners_url": "",
  "footer": [
    { "label": "User Agreement",
      "tooltip": "Disclaimer, Terms of Use and Privacy Statements",
      "url": "https://github.com/imodpasteur/ShareLoc.XYZ/blob/main/user-agreement.md#user-agreement"
    },
    { "label": "Source code",
      "tooltip": "Github Repository",
      "url": "https://github.com/imodpasteur/shareLoc.xyz"
    },
    { "label": "Report issues",
      "tooltip": "Report an issue on Github",
      "url": "https://github.com/imodpasteur/ShareLoc.XYZ/issues"
    },
    { "label": "Contact Us",
      "tooltip": "Send us a private message",
      "url": "https://oeway.typeform.com/to/rdkPmd"
    }
  ],
  "zenodo_config": {
    "enabled": true,
    "sandbox_client_id": "LrUl7gtNg50dciX8wkXHCD7Sy75ZpEytUarkekWp",
    "production_client_id": "hi4F8IWRtlIoZsAg3fJGF5lsHXAFr30NuYz8YHot",
    "community": "shareloc",
    "use_sandbox": false
  },
  "rdf_root_repo": "imodpasteur/shareLoc.xyz",
  "enable_comment": true,
  "splash_title": "",
  "splash_subtitle": "ShareLoc.XYZ: An open platform for sharing single-molecule localization microscopy data and tools",
  "splash_feature_list": [
  ],
  "table_view": {
    "columns": ["name", "authors", "badges", "apps"]
  },
  "attachment_table": {
    "columns": [
      {
        "field": "name",
        "label": "Name",
        "width": 80,
        "sortable": true
      },
      {
        "field": "files",
        "label": "Files",
        "width": 80,
        "type": "files",
        "sortable": false
      },
      
      {
        "field": "description",
        "label": "Description",
        "width": 100,
        "max_length": 100,
        "sortable": true
      },
      {
        "field": "timestamp",
        "label": "Timestamp",
        "class": "tag is-success",
        "sortable": true
      },
      {
        "field": "source",
        "label": "Source",
        "type": "url",
        "text": "open",
        "class": "button is-small"
      },
      {
        "field": "download_url",
        "label": "Download",
        "type": "url",
        "text": "Download",
        "class": "button is-small"
      },
      {
        "field": "views",
        "label": "Views",
        "width": 180,
        "type": "thumbnails",
        "sortable": false
      }
    ],
    "detailed": true,
    "detailed_image": null,
    "detailed_body": "description"
  },
  "footnote": "ShareLoc.XZY is a community efforts for promoting open science",
  "partners": [],
  "excluded_tags": ["shareloc.xyz", "shareloc.xyz:dataset", "smlm", "zenodo"],
  "resource_categories": [
    {
      "name": "Dataset",
      "type": "dataset",
      "description": "List datasets",
      "outline_color": "rgb(138 138 138)",
      "default_links": [
        "smlm-viewer",
        "shareloc-downloader"
      ],
      "tag_categories": {
        "1.modality": [
          "palm", 
          "storm",
          "dstorm", 
          "dna-paint", 
          "paint"
        ],
        "2.cell line": [
          "u2os", 
          "u373", 
          "cos7",
          "ref52",
          "mdck",
          "hela",
          "nih3t3",
          "yeast", 
          "e-coli",
          "listeria", 
          "archaea",
          "mef"
        ],
        "3.structure": [
          "microtubules",
          "mitochondria",
          "actin",
          "nuclear-pore-complex",
          "dna",
          "plasma-membrane",
          "neuronal-synapse",
          "vimentin",
          "clathrin"
        ],
        "4.fluorophore": [
          "alexa-647",
          "alexa-532",
          "cy5",
          "phalloidin-647",
          "cf680",
          "hmsir",
          "jf-646",
          "pa-jf646",
          "alexa-555",
          "meos2",
          "mapple",
          "cy3b",
          "cf568",
          "dendra2",
          "pa-mcherry",
          "jf-568",
          "pa-jf568",
          "nile-red",     
          "pa-gfp",
          "dronpa",
          "atto-488", 
          "atto-520",
          "atto-568"
        ],
        "5.labeling strategy":[
          "transient-transfection",
          "stable-knock-in",
          "endogenous-crispr-labeling",
          "direct-immuno-labeling",
          "indirect-immuno-labeling",
          "halo-tag",
          "snap-tag",
          "tetracysteine-tag"     
        ],
        "6.target molecule":[
          "nup133",
          "nup96",
          "tom22",
          "wga",
          "escrt",
          "ftsz",
          "alpha-tubulin",
          "beta-tubulin",
          "h2",
          "h3",
          "h1",
          "polye", 
          "actin",
          "gp210"
        ],
        "7.dimension":[
          "2d",
          "3d"
        ],
        "8.camera":[
          "em-ccd",
          "scmos"
        ],
        "9.reconstruction software":[
          "thunderstorm",
          "smap",
          "smoiphot",
          "zola-3d",
          "picasso",
          "quickpalm"
        ],
        "10.buffer":[
          "gluox",
          "catalase",
          "mea",
          "abbelight-safe-reagent",
          "idylle-everspark"
        ],
        "11.fixation":[
          "4%pfa",
          "1%pfa",
          "pfa+gluta",
          "glyoxal",
          "methanol"
        ]
      }
    },
    {
      "name": "Applications",
      "type": "application",
      "outline_color": "rgb(83 230 7)",
      "description": "List software, web apps and utility tools"
    }
  ]
}