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modules.json
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{
"name": "nf-core/argogermline",
"homePage": "https://github.com/nf-core/argogermline",
"repos": {
"https://github.com/icgc-argo-workflows/argo-modules.git": {
"modules": {
"icgc-argo-workflows": {
"cleanup": {
"branch": "main",
"git_sha": "517b0a82ed697564891e18ff5dba35a70f9da225",
"installed_by": ["modules"]
},
"payload/germlinevariant": {
"branch": "germline_variant_payload",
"git_sha": "26efb189383a035fcf8ccdecef7f91d06d6f75c6",
"installed_by": ["modules"]
},
"score/download": {
"branch": "main",
"git_sha": "f5e2d027a4f886a8702f5c4be825801513b578d0",
"installed_by": ["song_score_download"]
},
"score/upload": {
"branch": "main",
"git_sha": "f5e2d027a4f886a8702f5c4be825801513b578d0",
"installed_by": ["song_score_upload"]
},
"song/get": {
"branch": "main",
"git_sha": "f5e2d027a4f886a8702f5c4be825801513b578d0",
"installed_by": ["song_score_download"]
},
"song/manifest": {
"branch": "main",
"git_sha": "f5e2d027a4f886a8702f5c4be825801513b578d0",
"installed_by": ["song_score_upload"]
},
"song/publish": {
"branch": "main",
"git_sha": "f5e2d027a4f886a8702f5c4be825801513b578d0",
"installed_by": ["song_score_upload"]
},
"song/submit": {
"branch": "main",
"git_sha": "f5e2d027a4f886a8702f5c4be825801513b578d0",
"installed_by": ["song_score_upload"]
}
}
},
"subworkflows": {
"icgc-argo-workflows": {
"song_score_download": {
"branch": "main",
"git_sha": "92aa620385099e94401c22b8633cc55ed34ca10e",
"installed_by": ["subworkflows"]
},
"song_score_upload": {
"branch": "main",
"git_sha": "92aa620385099e94401c22b8633cc55ed34ca10e",
"installed_by": ["subworkflows"]
}
}
}
},
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcftools/mpileup": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"bcftools/sort": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"cnvkit/batch": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": ["modules"]
},
"cnvkit/export": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"deepvariant": {
"branch": "master",
"git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013",
"installed_by": ["modules"]
},
"freebayes": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"gatk4/applybqsr": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"gatk4/applyvqsr": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"gatk4/baserecalibrator": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"gatk4/cnnscorevariants": {
"branch": "master",
"git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71",
"installed_by": ["modules"]
},
"gatk4/filtervarianttranches": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"gatk4/gatherbqsrreports": {
"branch": "master",
"git_sha": "a252064ec62dc690a59760f7be482d37a02ecd99",
"installed_by": ["modules"]
},
"gatk4/genomicsdbimport": {
"branch": "master",
"git_sha": "34c17664b54e3b45faf4e32b52bf4086ca249afe",
"installed_by": ["modules"]
},
"gatk4/genotypegvcfs": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"gatk4/haplotypecaller": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"gatk4/mergevcfs": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"gatk4/selectvariants": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"gatk4/variantrecalibrator": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"manta/germline": {
"branch": "master",
"git_sha": "80dbd95c558a0ebb2123d95f50c093a7f714a0d7",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"samtools/mpileup": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"strelka/germline": {
"branch": "master",
"git_sha": "80dbd95c558a0ebb2123d95f50c093a7f714a0d7",
"installed_by": ["modules"]
},
"tabix/bgziptabix": {
"branch": "master",
"git_sha": "01b3b2509d76625b6d6cd613b349fb4777712a15",
"installed_by": ["modules"]
},
"tabix/tabix": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"tiddit/sv": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
}
}
}
}
}
}