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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="description" content="">
<meta name="author" content="">
<title>iMicrobe</title>
<link href="./plugins/landing-page/css/main.css" rel="stylesheet">
<style>
/* These styles are embedded here to render faster to prevent page flicker */
@keyframes fadeIn{
0% {
opacity:0;
}
100% {
opacity:1;
}
}
.fade-in {
animation: fadeIn .5s ease forwards;
}
/* Kludge to remove padding under navbar */
.navbar-static-top {
margin: 0;
}
</style>
</head>
<body>
<div class="fade-in">
<!-- Header -->
<a name="about"></a>
<div class="intro-header">
<div class="container">
<div class="row">
<div class="col-lg-12">
<div class="intro-message">
<h1>iMicrobe Enables Science</h1>
<h3>Fostering community-driven science and data discovery.</h3>
<hr class="intro-divider">
<a class="btn btn-secondary btn-lg" href="https://hurwitzlab.gitbook.io/imicrobe/getting-started-1/getting-an-account-on-imicrobe" target="_blank">Get Started</a>
<a class="btn btn-secondary btn-lg" href="#/login">Login</a>
</div>
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</div>
</div>
</div>
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<a name="usecases"></a>
<div class="content-section-b">
<div class="container">
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<div>
<br>
<div class="clearfix"></div>
<div class="row">
<div class="col-sm-1">
<div class="glyphicon glyphicon-eye-open icon-bullet"></div>
</div>
<div class="col-sm-5">
<h3>Browse</h3>
<p>"Window shop" for datasets by <a href="#samples">name</a>, <a href="#projects">project</a>, <a href="#investigators">principal investigator</a>, and more! </p>
</div>
<div class="col-sm-1">
<div class="glyphicon glyphicon-file icon-bullet"></div>
</div>
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<h3>Recommendations</h3>
<p>Join the iMicrobe community and get <a href="#pubchase">personalized recommendations</a> on recent articles in microbial ecology.</p>
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<div class="glyphicon glyphicon-search icon-bullet"></div>
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<h3>Search</h3>
<p>Hone-in on datasets based on environmental factors using our powerful <a href="#samples">search tool</a>.</p>
</div>
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<div class="glyphicon glyphicon-book icon-bullet"></div>
</div>
<div class="col-sm-5">
<h3>Learn</h3>
<p>Tap into an ecosystem of solutions for analyzing large-scale meta- ‘omics datasets at <a href="http://protocols.io">protocols.io</a> using iMicrobe tools. <a href="https://www.protocols.io/groups/imicrobe">Join the community</a> and share your protocols using iMicrobe Apps.</p>
</div>
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<div class="glyphicon glyphicon-globe icon-bullet"></div>
</div>
<div class="col-sm-5">
<h3>Discover</h3>
<p>Use our analytics to find datasets like yours based on sequence composition and shared functional or taxonomic annotations.</p>
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</div>
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<h3>Developers</h3>
<p>Join a network of open-source developers who are creating tools for microbial ecology. Incorporate third-party software or add your own code using docker containers at <a href="https://pods.iplantcollaborative.org/wiki/display/DEmanual/Dockerizing+Your+Tools+for+the+CyVerse+Discovery+Environment">CyVerse</a>.<br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5070597.1/">Read more</a></p>
</div>
</div>
<br><br>
<div class="row center">
iMicrobe is funded by NSF award <a href="https://www.nsf.gov/awardsearch/showAward?AWD_ID=1640775" target="_blank">#1640775</a>
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<h2 class="section-heading">Search Using<br>Environmental Conditions</h2>
<p class="lead">
Find samples of interest based on environmental conditions and select them for analysis.
</p>
</div>
<div class="col-lg-5 col-lg-offset-2 col-sm-6">
<a href="./plugins/landing-page/img/sample-search.gif"><img class="img-responsive shadow" src="./plugins/landing-page/img/sample-search.gif" loading="lazy" alt=""></a>
</div>
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</div>
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<div class="container">
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<div class="col-lg-5 col-lg-offset-1 col-sm-push-6 col-sm-6">
<hr class="section-heading-spacer">
<div class="clearfix"></div>
<h2 class="section-heading">Run Tools on<br>Scalable HPC</h2>
<p class="lead">
Access common analysis tools and run them on <a href="https://www.xsede.org/">XSEDE</a> supercomputing resources via an easy-to-use interface.
</p>
</div>
<div class="col-lg-5 col-sm-pull-6 col-sm-6">
<a href="./plugins/landing-page/img/apps.gif"><img class="img-responsive shadow" src="./plugins/landing-page/img/apps.gif" loading="lazy" alt=""></a>
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<div class="col-lg-5 col-sm-6">
<hr class="section-heading-spacer">
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<h2 class="section-heading">Access Massive<br>Public Datasets</h2>
<p class="lead">
<a target="_blank" href="http://www.syndicate-storage.org/about.html">Syndicate</a> is an open-source content delivery network (CDN) developed by <a href="http://www.opencloud.us/">OpenCloud</a>
that enables you to connect to massive datasets from anywhere, including your PC.
</p>
</div>
<div class="col-lg-5 col-lg-offset-2 col-sm-6">
<a href="./plugins/landing-page/img/syndicate-terminal.gif"><img class="img-responsive shadow" src="./plugins/landing-page/img/syndicate-terminal.gif" loading="lazy" alt=""></a>
</div>
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<a name="contact"></a>
<div class="banner">
<div class="container">
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<div class="col-lg-6">
<h2>Connect to iMicrobe:</h2>
</div>
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<ul class="list-inline banner-social-buttons">
<li>
<a href="http://www.hurwitzlab.org/blog/" target="_blank" class="btn btn-default btn-lg"><span class="network-name">Blog</span></a>
</li>
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<a href="http://www.hurwitzlab.org/" target="_blank" class="btn btn-default btn-lg"><span class="network-name">Lab Website</span></a>
</li>
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<a href="https://twitter.com/HurwitzLab" target="_blank" class="btn btn-default btn-lg"><span class="network-name">Twitter</span></a>
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Copyright © Hurwitz Lab. All Rights Reserved
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