README.md

docker-fastqc

Dockerized FastQC: A high throughput sequence QC analysis tool

How to Run

$ docker run -it --rm fastqc:0.11.9

• run.sh: Use this if you already have FASTQ files downloaded in a specific directory on your local machine.
• download-and-run.sh: This will download FASTQ files from BaseSpace Sequence Hub and then run FASTQC on them. This requires BaseSpace Command Line Interface (CLI).

Build Container Image

./build.sh

Push to Docker Registry

Either you can use the docker push command or run push.sh (requires SCING):

./push.sh