This is a summary of the changelog. Complete change can be found in the <main documentation.
- Include RNASEQ (EBI) in module rnaseq_ebi
- Renamed kegg.KEGG.info into dbinfo , which was overloaded with Logging
- Replaced deprecated HGNC with the official web service from genenames.org
- Fully updated EUtils since WSDL is now down; implementation uses REST now.
- Removed the apps/taxonomy module now part of http://github.com/biokit.
- added http_delete in services.py
- CACHE files are now stored in a general directory in the home, rather than locally
- Source code moved to github.com
- New REST class to use requests package instead of urllib2.
- Creation of a global configuration file in .config/bioservice/bioservices.cfg
- NEW services: Reactome, Readseq, Ensembl, EUtils
- add try/except for pandas library.
- added sub-package called apps with some useful tools (fasta,peptides, taxon) in bioservices.apps directory
- NEW services: BioDBnet, BioDBNet, MUSCLE, PathwayCommons, GeneProf
- NEW services: biocarta, pfam, ChEBI, UniChem
- Add documentation and examples related to Galaxy/BioPython.
- NEW Service : HGNC
- Use BeautifulSoup4 instead of 3
- add PDB, ArrayExpress, biomart, chemspider draft, eutils, miriam, arrayexpress
- First release of bioservices
- Stable version of bioservices including the following services:
- BioModels, Kegg, Reactome, Chembl, PICR, QuickGO, Rhea, UniProt, WSDbfetch, NCBIblast, PSICQUIC, Wikipath