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Feature/hafsv1 maxobs goesr meso amvs#17

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BinLiu-NOAA merged 243 commits intofeature/hafsv1_temphafs-community/GSI:feature/hafsv1_tempfrom feature/hafsv1_maxobs_goesr_meso_amvshafs-community/GSI:feature/hafsv1_maxobs_goesr_meso_amvsCopy head branch name to clipboardSep 15, 2023

+54-18

Commits

Commits on Dec 7, 2018

• update

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• update

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Commits on Feb 21, 2019

• check in the initial version of the EnKF incorporating FV3 regional ensembles on developing mod.

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• check in initial version for the GSI incorporating FV3 regional ensembles on developing mode

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Commits on Mar 1, 2019

• Merge branch 'master' into enkf_fv3native_tl

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Commits on Mar 6, 2019

• to check in a few modifiations which were not checked in successfully.

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Commits on Mar 7, 2019

• add a few modications dealing with the reversed order of data in fv3 reg.

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• Merge branch 'master' into EXP-GSI_fv3_reg_ensemble

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• just adding a debug line before merging

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• commit in a minor modification

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• Merge branch 'master' into EXP-GSI_fv3_reg_ensemble

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Commits on Mar 21, 2019

• some cleaning up for this basic working version

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Commits on Apr 2, 2019

• mainly for adding fv3sar_ensemble_opt option

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Commits on Apr 4, 2019

• Henry's GSI update for jet

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Commits on Apr 12, 2019

• Merge branch 'EXP-GSI_fv3_reg_ensemble' of gerrit:ProdGSI into EXP-GSI_fv3_reg_ensemble

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Commits on Apr 15, 2019

• add fv3sar_ensemble_opt

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Commits on Apr 16, 2019

• Merge branch 'master' of gerrit:ProdGSI into EXP-GSI_fv3_reg_ensemble

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• Merge branch 'EXP-GSI_fv3_reg_ensemble' of gerrit:ProdGSI into EXP-GSI_fv3_reg_ensemble

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Commits on Apr 19, 2019

• add the option ldo_enscalc_option for the program to carry out the functions of ensemble mean and recenter

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Commits on May 1, 2019

• some updates while a problem is to be investigated for T

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Commits on May 2, 2019

• fixed a bug which made the sphum were written to T in the output

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Commits on May 3, 2019

• deleted a few debug writing

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Commits on May 8, 2019

• fixed a couple of bugs with code cleaning

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Commits on May 10, 2019

• add fv3sar_bg_opt with new function when it = 1, with cold start fv3sar files as background

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Commits on Jun 13, 2019

• replace subroutines in mod_fv3_lola.f90 by ones in mod_fv3_lolgrid.f90 for following dual resolution capabilities

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Commits on Jun 22, 2019

• HAFS: Update the submodules.

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Commits on Jul 1, 2019

• comitt a few debug write commands temperarily

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• Merge branch 'EXP-GSI_fv3_reg_ensemble' of gerrit:ProdGSI into EXP-GSI_fv3_reg_ensemble

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• check in some temperary debug lines

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Commits on Jul 9, 2019

• minor modifications

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Commits on Jul 10, 2019

• after some cleaning up

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• mainly for cleaning up

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Commits on Jul 23, 2019

• a basic version for dual resolution capability for FV3SAR ensembles

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Commits on Jul 24, 2019

• resolving a few conflicts after mering master

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• the first basic version added with l_both_fv3sar_gfs_ens option

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Commits on Jul 31, 2019

• Merge branch 'master' into HAFS

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Commits on Aug 9, 2019

• cleaning a couple of remaining debuging lines in fv3_regional_interface.f90

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Commits on Aug 15, 2019

• Merge branch 'master' into EXP-GSI_fv3_reg_ensemble

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• cleaning up a few remaining debug lines

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Commits on Aug 23, 2019

• resolve a few trival merging conflicts

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• Merge branch 'master' into EXP-GSI_fv3_reg_ensemble_dualv1mix1

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• a trival modification to actual argument of stop2 in controlvec.f90

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Commits on Aug 24, 2019

• updated to master

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• delete output to satbias_angle.out following the gsi master

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Commits on Aug 28, 2019

• after merging with gsi master

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Commits on Sep 12, 2019

• Merge branch 'master' into HAFS

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Commits on Sep 26, 2019

• resolve some minor conflicts when mering with EXP-GSI_fv3_reg_ensemble

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• add some modifications for Hera transfered from M. Pots 's branch

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• Merge remote-tracking branch 'origin/EXP-GSI_fv3_reg_ensemble' into EXP-GSI_fv3_reg_ensemble_dualv1mix1

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Commits on Sep 27, 2019

• Merge remote-tracking branch 'origin/EXP-GSI_fv3_reg_ensemble' into origin/enkf_fv3native_t2

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Commits on Dec 19, 2019

• a couple of fixes

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Commits on Jan 27, 2020

• some new codes

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• test

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• test2

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• test

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Commits on Jan 28, 2020

• test3

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Commits on Mar 6, 2020

• fix for fv3sar coldstart option and conslitation of the logic about n_ens_??

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Commits on Mar 9, 2020

• manually incorporate Wanshu's fix dealing with the problem near lon=0 for fv3sar

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• after merging

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Commits on Mar 16, 2020

• with a fix for calculation of coeffx and coeffy incorporated with the current dual resolution option

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Commits on Mar 24, 2020

• Merge branch 'master' into HAFS

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Commits on Apr 23, 2020

• Merge branch 'master' into HAFS

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Commits on Apr 24, 2020

• another fix for fv3sar_bg_opt!=0

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Commits on May 18, 2020

• with fix for fv3sar wind-rotation

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• add Xiaoyan 's coding of Hongli's example to reject obs near LBC

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Commits on May 27, 2020

• fix a couple of compilation errors

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Commits on Jun 4, 2020

• Merge pull request #1 from hafs-community/master

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Commits on Jun 13, 2020

• Update modulefile.ProdGSI.jet to restore building on Jet.

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Commits on Jun 15, 2020

• Switch to use George V.'s NCEPLIBS so that GSI can successfully run on Jet.

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Commits on Oct 21, 2020

• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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Commits on Oct 27, 2020

• adding a fix for dual resolution runs

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Commits on Nov 6, 2020

• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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• Merge remote-tracking branch 'remotes/TingLei/EXP-GSI_fv3_reg_ensemble_dualv1mix1' into feature/regional_ensda

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Commits on Nov 13, 2020

• merging the updated master with enkf_fv3native_t2_new

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Commits on Nov 17, 2020

• update with EMC gsi master

  

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• merge with EMC gsi master

  

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Commits on Nov 18, 2020

• after merging with gsi master

  

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• Merge branch 'EXP-GSI_fv3_reg_ensemble_dualv1mix1' into feature/regional_ensda

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Commits on Nov 19, 2020

• Merge branch 'master' into support/HAFS

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• Merge branch 'support/HAFS' into feature/regional_ensda

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• Remove the unneeded input parameter mype for general_read_fv3_regional in

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• some cleaning after merging with master

  

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• cleaning files which should be not in the git monitoring

  

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• some cleaning

  

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• merging with EMC GSI master

  

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• some cleaning for git

  

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• Merge branch 'enkf_fv3native_t2_new' into feature/regional_ensda

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Commits on Nov 20, 2020

• Update the fix submodule.

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Commits on Dec 13, 2020

• FGAT related changes for FV3 regional DA (#2)

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Commits on Jan 7, 2021

• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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• Merge branch 'support/HAFS' into feature/regional_ensda

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Commits on Jan 12, 2021

• Add the driver script ush/build_enkf_cmake.sh to build enkf_fv3reg.x.

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Commits on Jan 22, 2021

• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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• Merge branch 'support/HAFS' into feature/regional_ensda

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Commits on Feb 8, 2021

• Modifications from Xu Lu and Xuguang Wang (OU) to enable running dual

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Commits on Feb 16, 2021

• Minor modifications for dual resolution regional ensembles (#3)

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• Changes from Xu Lu (OU): No need to introduce extra variables when the

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• Merge pull request #4 from hafs-community/feature/regional_ensda_dualres

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Commits on Feb 21, 2021

• Add a build option to build gsi/enkf in the FV3reg mode.

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Commits on Mar 12, 2021

• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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Commits on Mar 15, 2021

• Remove the submodules fix and libsrc.

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• Import libsrc/wrflib directly.

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• Remove the submodules fix and libsrc.

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• Import libsrc/wrflib directly.

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Commits on Mar 16, 2021

• merging with HAFS, for being now ignore developments with grid_type_fv3_regional

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Commits on Mar 17, 2021

• Create symbolic links for the modulefiles for wcoss_cray and wcoss_dell_p3 so

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• Merge pull request #5 from hafs-community/feature/regional_ensda_sync

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Commits on Mar 23, 2021

• Fix a bug with q when tsen is used as control variable in fv3 regional EnKF analysis (#6)

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Commits on Mar 26, 2021

• A bug fix in gridio_fv3reg.f90 and add delp as a control variable choice

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Commits on Mar 30, 2021

• Feature/ensda bugfix q new (#10)

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Commits on Apr 1, 2021

• Merge remote-tracking branch 'upstream/master' into support/HAFS

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Commits on Apr 4, 2021

• Merge branch 'support/HAFS' into feature/regional_ensda

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Commits on Apr 13, 2021

• Update modulefile.ProdGSI.jet so that module load works on Jet.

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• Use cmake/3.16.2 in modulefile.ProdGSI.wcoss_c so that it can build on wcoss_c

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Commits on Apr 15, 2021

• Modify build_all_cmake.sh so that it can work on Jet properly.

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• Merge branch 'feature/regional_ensda' of https://github.com/hafs-community/GSI into feature/regional_ensda

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Commits on Apr 16, 2021

• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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• Merge branch 'support/HAFS' into feature/regional_ensda

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Commits on May 6, 2021

• Remove the duplicated line of "deallocate(ges_z_ens)" in

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Commits on May 10, 2021

• the fix for incorrect reference to fv3reg conversion subroutines in mod_fv3_loal.f90 and for a newer crtm lib to avoid GSI aborion running in debug mode

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• Merge pull request #11 from hafs-community/feature/regional_ensda_fix1

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Commits on May 12, 2021

• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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Commits on Jun 4, 2021

• Modifications from Xu Lu and Xuguang Wang (OU) to enable TDR and NEXRAD radial

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Commits on Jun 14, 2021

• Bug fix for enkf analysis steps when using t(tv) as a control vector variable for regional FV3 DA (#12)

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Commits on Jul 10, 2021

• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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Commits on Jul 23, 2021

• Bug fixes and optimizations to the dual-resolution by Xu Lu & Xuguang Wang from OU, POC: xuguang.wang@ou.edu

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Commits on Jul 25, 2021

• Merge remote-tracking branch 'remotes/origin/feature/regional_ensda_dualresfix' into support/HAFS

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• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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Commits on Jul 30, 2021

• Merge pull request #14 from hafs-community/feature/regional_ensda_dualresfix

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• Merge remote-tracking branch 'remotes/origin/support/HAFS' into feature/regional_ensda

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Commits on Aug 6, 2021

• Merge remote-tracking branch 'remotes/upstream/master' into support/HAFS

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• Further consolidation from Ting Lei, Xu Lu and Xuguang Wang for dual-resolution EnVar for HAFS. POC: xuguang.wang@ou.edu

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• A fix for the logics ,in the enkf_fv3reg, when q_ind > 0 while pseudo_rh=.true. and. ps_ind <0 in the ensemble meaning and recentering

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• added back the 'delp' in the vars3d_supported for fv3_reg , which was removed in the upstream branch

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• GitHub Issue NOAA-EMC/GSI#325. Merge FGAT capability for regional DA

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• Github issue #310. Correct mean correction time series plots. Fixes #310.

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• Merge pull request #366 from EdwardSafford-NOAA/develop

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• GitHub Issue NOAA-EMC/GSI #370: use nf90_inq_varid to set integer addresses for lon and lat variables

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• GitHub Issue NOAA-EMC/GSI#368. WCOSS2 port.

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• Github issue #373. Compress RadMon data files. Completes #373.

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• Removed extraneous lines from EFSOI script, and extraneous

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• Merge commit '002dc8711194de268d7786e455269d25715e93f9' into feature/hafsv0.3_fnl

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• Update src/gsi/gsi_rfv3io_mod.f90.

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• Properly use mpimod, only: mpi_comm_world in src/enkf/gridinfo_fv3reg.f90.

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• 2022-05-28 Xu Lu & Xuguang Wang. POC: xuguang.wang@ou.edu

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• GitHub Issue NOAA-EMC/GSI#400. Removed global_gsi.x from:

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• Merge pull request #401 from MichaelLueken-NOAA/release/gfsda.v16.3.0

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• add option to PRUNE_4NCO when NCO builds the gsi

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• GitHub Issue NOAA-EMC/GSI#402. Add necessary entries to build_4nco_global.sh to build required utilities.

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• Merge pull request #403 from MichaelLueken-NOAA/feature/add_util_options

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• add option to PRUNE_4NCO when NCO builds the gsi

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• Merge branch 'feature/release-gfsda.v16.3.0-prune' of https://github.com/aerorahul/gsi into feature/release-gfsda.v16.3.0-prune

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• Merge pull request #404 from aerorahul/feature/release-gfsda.v16.3.0-prune

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• bug in the if statement for pruning

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• Merge pull request #405 from aerorahul/bugfix/release-gfsda.v16.3.0-prune

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Commits on Jun 16, 2022

• (1) Set cao_check and ta2tb to true (2) Set dmesh(4)=50.0 for VIIRS and AVHRR (3) Point CRTM cloud coefficient file to GFDL one.

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• Remove fix files not used with global

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• For GPSRO, change nsig_ext from 12 to 45.

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• Merge pull request #412 from NOAA-EMC/release/gfsda.v16.3.0_emily

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• Replace global_anavifo_allhydro.l127.txt with global_anavinfo.l127.txt

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• Modify wcoss2 modulefiles to compile GSI with CRTM-2.4.0

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• Update global anavinfo

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• Modify the threshold in checking the minminum backgound variance for

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• Add handling for channel initialized with zero background variance in satbias_pc file. Modify varx condition to detect old channel.

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• Merge pull request #439 from NOAA-EMC/release/gfsda.v16.3.0_emily

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• Modify the way the penalty is calculated for winds.

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• Merge pull request #446 from NOAA-EMC/release/gfsda.v16.3.0_statsfix

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• Fix the inconsistency for the NSST increment file (dftanl) between GSI

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• Update aircraftinfo.f90

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• Merge pull request #448 from NOAA-EMC/release/gfsda.v16.3.0_nsst

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• Add additional directories and files to prune_4nco_global.sh (#137)

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• Updates in response to errors identified by -check all (#137)

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• add string FATAL to error messages flagging input file errors (#137)

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• Update prune_4nco.sh to remove the entire Conventional_Monitor directory (#137)

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• Remove hardwired definition for NDATE in lieu of prod_util definition (#137)

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• Remove NEMSIOGET definition from ex scripts; remove NDATE definition in MinMon_config in lieu of prod_util definition (#137)

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• Remove para section for crtm/2.4.0 in gsi_wcoss2.lua; comment out Conventional_Monitor for BUILD_UTIL_MON option (#137)

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• Add AVHRR Metop-C and Metop-A

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• Merge pull request #458 from NOAA-EMC/release/gfsda.v16.3.0_radmon

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• Merge remote-tracking branch 'upstream/release/gfsda.v16.3.0' into release/gfsda.v16.3.0

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• Fixed variables not initialized correctly in conventional data

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• Fix un-initialized variables

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• Remove Mitigation_flag_AMVQ (#137)

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• Check file or directory existence before attempting to prune (#137)

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• Merge pull request #456 from RussTreadon-NOAA/release/gfsda.v16.3.0

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• Merge pull request #464 from NOAA-EMC/release/gfsda.v16.3.0_warnings

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• Correct errors in restore function of prune_4nco_global.sh (#137)

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• Additional corrections to prune script (#137)

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• Add efsoi scripts to list of scripts to prune (#137)

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• Update prune_4nco_global.sh so that it works on Hera (#137)

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• Add DA Monitor driver scripts to prune list in prune_4nco_global.sh (#137)

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• Merge pull request #466 from RussTreadon-NOAA/release/gfsda.v16.3.0

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• Update to bufr/11.7.0, add safeguard to avoid out of bounds reference in read_prepbufr.f90 (#474)

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• Update gsi_wcoss2.lua PrgEnv_intel, craype, cray_mpich to NCO requested versions (#474)

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• Fix iargc bug in getsigensmeanp_smooth_ncep.f90 (#474)

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• Revert update to PrgEnv_intel, craype, cray_mpich versions in gsi_wcoss2.lua (#474)

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• Merge pull request #475 from RussTreadon-NOAA/release/gfsda.v16.3.0

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• Update calc_analysis.fd/CMakeLists.txt to use w3emc_4 (#478)

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• Merge pull request #479 from RussTreadon-NOAA/release/gfsda.v16.3.0

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Commits on Oct 7, 2022

• Update global_satinfo.txt: turn off VIIRS data (set to monitoring mode)

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• Add infomration regarding VIIRS data for gfsv16.3 historical satinfo

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• Merge pull request #488 from NOAA-EMC/release/gfsda.v16.3.0_viirs

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Commits on Oct 27, 2022

• Merge remote-tracking branch 'remotes/upstream/develop' into feature/hafs_sync_202210

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• Merge remote-tracking branch 'remotes/upstream/develop' into feature/hafs_sync_202210

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• Fix a module use issue for mpi_comm_world in src/enkf/gridinfo_fv3reg.f90.

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• Merge remote-tracking branch 'remotes/upstream/release/gfsda.v16.3.0' into feature/hafs_sync_202210

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• Add delp back in the vars3d_supported list in src/enkf/gridinfo_fv3reg.f90.

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• Update modulefiles/gsi_wcoss2.lua to use WCOSS2 production area modules. (From @BijuThomas-NOAA)

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Commits on Mar 17, 2023

• Add code to deal with the CIMSS enhanced AMVs in new BUFR (From Li Bi).

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• Revert "Update modulefiles/gsi_wcoss2.lua to use WCOSS2 production area modules. (From @BijuThomas-NOAA)"

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• Update src/gsi/read_obs.F90 so that it can read satwndbufr and

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Commits on Mar 22, 2023

• Update read_obs.F90 to deal with satwnd and satwhr bufr_d files properly. (From Yonghui Weng).

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• Drop off observations when the number of obs exceeds maxobs to avoid the

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Commits on Mar 29, 2023

• Update gsi_wcoss2.lua to use the prod location for ncio and ncdiag modules (From @BijuThomas-NOAA).

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• Remove the unneeded libsrc/wrflib.

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• Merge remote-tracking branch 'remotes/upstream/develop' into feature/hafs_sync_202307

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• further sorting/re-organizing steps for q

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• *Bug fix for reading dual-resolution regional ensembles when the domain crosses the zero longitude.

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• Merge remote-tracking branch 'remotes/origin/feature/hafs_sync_202307_tlei' into feature/hafs_sync_202307

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• Merge remote-tracking branch 'remotes/upstream/develop' into feature/hafs_sync_202307

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• Clean up the HAFS related dual-resolution and EnKF changes to prepare the pull request branch.

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Commits on Aug 28, 2023

• Merge HAFS GSI changes with latest GSI dev branch

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• added GSI dev branch recently added flash data assimilation related part

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• Added changes of GSI dev branch in read_obs.F90 and read_prepbufr.f90

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• Merge remote-tracking branch 'upstream/develop' into feature/hafsv1_maxobs_goesr_meso_amvs

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