Merge pull request #128 from greenelab/casey-cs-rev-edits

[ci skip]

This build is based on
45f778d.

This commit was created by the following CI build and job:
https://github.com/greenelab/iscb-diversity-manuscript/commit/45f778da125ac069b0e143f8172a5647cfbc3a39/checks
https://github.com/greenelab/iscb-diversity-manuscript/runs/716548176

references.json

@@ -1241,6 +1241,7 @@
         ]
       ]
     },
+    "abstract": "Scientific authorship has been increasingly complemented with contributorship statements. While such statements are said to ensure more equitable credit and responsibility attribution, they also provide an opportunity to examine the roles and functions that authors play in the construction of knowledge and the relationship between these roles and authorship order. Drawing on a comprehensive and multidisciplinary dataset of 87,002 documents in which contributorship statements are found, this article examines the forms that division of labor takes across disciplines, the relationships between various types of contributions, as well as the relationships between the contribution types and various indicators of authors’ seniority. It shows that scientific work is more highly divided in medical disciplines than in mathematics, physics, and disciplines of the social sciences, and that, with the exception of medicine, the writing of the paper is the task most often associated with authorship. The results suggest a clear distinction between contributions that could be labeled as ‘technical’ and those that could be considered ‘conceptual’: While conceptual tasks are typically associated with authors with higher seniority, technical tasks are more often performed by younger scholars. Finally, results provide evidence of a U-shaped relationship between extent of contribution and author order: In all disciplines, first and last authors typically contribute to more tasks than middle authors. The paper concludes with a discussion of the implications of the results for the reward system of science.",
     "container-title": "Social Studies of Science",
     "DOI": "10.1177/0306312716650046",
     "volume": "46",

spelling-error-locations.txt

@@ -2,7 +2,7 @@ content/00.front-matter.md:7:citable
 content/00.front-matter.md:9:iscb
 content/00.front-matter.md:9:iscb
 content/01.abstract.md:4:bioinformatics
-content/01.abstract.md:8:overrepresented
+content/01.abstract.md:5:authorships
 content/01.abstract.md:14:bioinformatics
 content/01.abstract.md:15:bioinformatics
 content/01.abstract.md:18:overrepresented
@@ -13,7 +13,10 @@ content/02.introduction.md:21:iscb
 content/02.introduction.md:21:ISCB
 content/02.introduction.md:21:ISMB
 content/02.introduction.md:21:RECOMB
-content/02.introduction.md:24:centric
+content/02.introduction.md:23:centric
+content/02.introduction.md:25:authorships
+content/02.introduction.md:26:authorships
+content/02.introduction.md:27:authorships
 content/20.results.md:3:dataset
 content/20.results.md:3:ISCB
 content/20.results.md:3:ISCB
@@ -28,75 +31,76 @@ content/20.results.md:8:Orengo
 content/20.results.md:8:RECOMB
 content/20.results.md:10:bioinformatics
 content/20.results.md:10:dataset
-content/20.results.md:21:iscb
+content/20.results.md:11:authorships
+content/20.results.md:12:authorships
 content/20.results.md:26:iscb
 content/20.results.md:27:dataset
 content/20.results.md:27:iscb
 content/20.results.md:28:iscb
 content/20.results.md:29:iscb
-content/20.results.md:39:arxiv
-content/20.results.md:49:ISCB
-content/20.results.md:49:ISCB's
-content/20.results.md:52:bioinformatics
-content/20.results.md:52:ISCB
-content/20.results.md:53:iscb
-content/20.results.md:53:ISCB
+content/20.results.md:31:authorships
+content/20.results.md:32:authorships
+content/20.results.md:41:arxiv
+content/20.results.md:51:ISCB
+content/20.results.md:51:ISCB's
+content/20.results.md:53:authorships
+content/20.results.md:54:bioinformatics
 content/20.results.md:54:ISCB
-content/20.results.md:60:bioinformatics
-content/20.results.md:61:ISCB
-content/20.results.md:62:ISCB
+content/20.results.md:55:iscb
+content/20.results.md:55:ISCB
+content/20.results.md:56:ISCB
+content/20.results.md:57:authorships
+content/20.results.md:62:bioinformatics
+content/20.results.md:63:ISCB
 content/20.results.md:64:ISCB
-content/20.results.md:65:iscb
-content/20.results.md:68:overrepresented
-content/20.results.md:70:dataset
-content/20.results.md:70:dataset
-content/20.results.md:70:LSTM
-content/20.results.md:80:bioinformatics
-content/20.results.md:81:ISCB
-content/20.results.md:82:ISCB
-content/20.results.md:83:overrepresented
-content/20.results.md:86:iscb
-content/20.results.md:88:LSTM
-content/20.results.md:88:underrepresentation
-content/20.results.md:90:LSTM
-content/20.results.md:91:iscb
-content/20.results.md:94:Overrepresentation
-content/20.results.md:96:ISCB
-content/20.results.md:97:LOE
-content/20.results.md:98:iscb
+content/20.results.md:66:ISCB
+content/20.results.md:67:iscb
+content/20.results.md:70:overrepresented
+content/20.results.md:72:authorships
+content/20.results.md:72:dataset
+content/20.results.md:72:dataset
+content/20.results.md:72:LSTM
+content/20.results.md:73:authorships
+content/20.results.md:82:authorships
+content/20.results.md:82:bioinformatics
+content/20.results.md:83:ISCB
+content/20.results.md:85:ISCB
+content/20.results.md:89:iscb
+content/20.results.md:91:LSTM
+content/20.results.md:91:underrepresentation
+content/20.results.md:93:iscb
+content/20.results.md:96:Overrepresentation
+content/20.results.md:98:authorships
+content/20.results.md:98:ISCB
 content/20.results.md:99:LOE
-content/20.results.md:100:LOE
+content/20.results.md:100:iscb
 content/20.results.md:101:LOE
-content/20.results.md:101:LOE
-content/20.results.md:101:overrepresentation
-content/20.results.md:101:underrepresentation
+content/20.results.md:102:LOE
+content/20.results.md:103:LOE
 content/20.results.md:103:LOE
+content/20.results.md:103:overrepresentation
+content/20.results.md:103:underrepresentation
 content/20.results.md:105:LOE
-content/20.results.md:107:overrepresentation
-content/20.results.md:107:underrepresentation
-content/20.results.md:109:iscb
-content/20.results.md:115:biorxiv
-content/20.results.md:115:preprint
-content/20.results.md:116:iscb
-content/20.results.md:117:ISCB
+content/20.results.md:107:LOE
+content/20.results.md:109:overrepresentation
+content/20.results.md:109:underrepresentation
+content/20.results.md:111:iscb
 content/20.results.md:118:iscb
-content/20.results.md:118:ISCB
-content/20.results.md:118:ISMB
-content/20.results.md:119:ISCB
-content/25.discussion.md:8:minoritized
-content/25.discussion.md:10:minoritized
-content/25.discussion.md:18:minoritized
-content/25.discussion.md:18:overrepresentation
-content/25.discussion.md:18:underrepresentation
-content/25.discussion.md:18:underrepresentation
-content/25.discussion.md:29:arxiv
-content/25.discussion.md:30:underrepresentation
-content/25.discussion.md:30:underrepresentation
-content/25.discussion.md:32:ISCB
-content/25.discussion.md:32:ISCB's
-content/25.discussion.md:35:minoritized
-content/25.discussion.md:38:geoscience
-content/25.discussion.md:45:underrecognized
+content/20.results.md:120:iscb
+content/20.results.md:120:ISCB
+content/20.results.md:120:ISMB
+content/20.results.md:121:ISCB
+content/25.discussion.md:9:minoritized
+content/25.discussion.md:19:ISCB
+content/25.discussion.md:23:authorships
+content/25.discussion.md:33:arxiv
+content/25.discussion.md:34:underrepresentation
+content/25.discussion.md:34:underrepresentation
+content/25.discussion.md:36:ISCB
+content/25.discussion.md:36:ISCB's
+content/25.discussion.md:43:minoritized
+content/25.discussion.md:46:geoscience
+content/25.discussion.md:53:underrecognized
 content/30.methods.md:3:Curation
 content/30.methods.md:5:iscb
 content/30.methods.md:5:iscb
@@ -326,7 +330,6 @@ content/40.resource-availability.md:8:dataset
 content/40.resource-availability.md:8:dataset
 content/response-to-reviewers.md:3:iscb
 content/response-to-reviewers.md:8:bioinformatics
-content/response-to-reviewers.md:12:bioRxiv
 content/response-to-reviewers.md:22:iscb
 content/response-to-reviewers.md:24:ISCB
 content/response-to-reviewers.md:27:iscb

spelling-errors.txt

@@ -15,7 +15,6 @@ Baruah
 Beijnen
 Berke
 bioinformatics
-biorxiv
 Biostatistics
 browsable
 Bülent
@@ -87,7 +86,7 @@ Lindgren
 Liu
 LOE
 Lorenzi
-LSTM
+lstm
 Magambo
 Manzaneque
 Matrika
@@ -100,7 +99,7 @@ Motieghader
 mrgazzara
 multiclass
 Musoro
-nameprism
+NamePrism
 Nikolaos
 Nilsson
 Nir
@@ -114,7 +113,6 @@ overrepresented
 Panagiotou
 Paulo
 Peleg
-preprint
 probablity
 Probhonjon
 pubmedpy
@@ -137,7 +135,7 @@ Sumudu
 Swanand
 Themis
 Toptas
-trang
+Trang
 Translational
 tri
 Tsiantis