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Expand All @@ -84,12 +84,12 @@
<h1 class="title">Analysis of ISCB honors reveals disparities</h1>
</header>
<p><em>A DOI-citable version of this manuscript is available at <a href="https://doi.org/10.1101/2020.04.14.927251" class="uri">https://doi.org/10.1101/2020.04.14.927251</a></em>.</p>
<p>This version of the manuscript <a href="https://github.com/greenelab/iscb-diversity-manuscript/compare/v1.0...d9f643daddfe2cdc806a2abedcbd993b2360c5ec">contains changes</a> subsequent to the <a href="https://github.com/greenelab/iscb-diversity-manuscript/releases/tag/v1.0">version 1.0 release</a>.</p>
<p>This version of the manuscript <a href="https://github.com/greenelab/iscb-diversity-manuscript/compare/v1.0...f1742982f977553f78dea53f0f3bc5b878f73c52">contains changes</a> subsequent to the <a href="https://github.com/greenelab/iscb-diversity-manuscript/releases/tag/v1.0">version 1.0 release</a>.</p>
<p><small><em>
This manuscript
(<a href="https://greenelab.github.io/iscb-diversity-manuscript/v/d9f643daddfe2cdc806a2abedcbd993b2360c5ec/">permalink</a>)
(<a href="https://greenelab.github.io/iscb-diversity-manuscript/v/f1742982f977553f78dea53f0f3bc5b878f73c52/">permalink</a>)
was automatically generated
from <a href="https://github.com/greenelab/iscb-diversity-manuscript/tree/d9f643daddfe2cdc806a2abedcbd993b2360c5ec">greenelab/iscb-diversity-manuscript@d9f643d</a>
from <a href="https://github.com/greenelab/iscb-diversity-manuscript/tree/f1742982f977553f78dea53f0f3bc5b878f73c52">greenelab/iscb-diversity-manuscript@f174298</a>
on June 10, 2021.
</em></small></p>
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Expand Down Expand Up @@ -573,7 +573,7 @@ <h3 id="statistical-analysis">Statistical Analysis</h3>
<span class="math inline">\(\epsilon \sim N(0, \sigma^2)\)</span> accounts for random variation.
An effect was deemed statistically significant if its corresponding <em>p</em> &lt; <span class="math inline">\(\alpha\)</span> = 0.01.</p>
<p>We emphasize that the units in this analysis are honors and authorships.
Therefore, each row of the input data frame represents either an honor or authorship with the scientist’s name’s gender probability and its probability from the name origin classifier (<span class="math inline">\(prob\)</span>).
Therefore, each row of the input data frame represents either an honor or authorship with the scientist’s name’s probability value from the gender or name origin classifier (<span class="math inline">\(prob\)</span>).
Our rationale was that, if a scientist was honored three times, these three honoree slots represented distinct selections and should be considered separately.
We also performed an alternative approach in which each pair of forename and last name as the unit of measurement and the citations were totaled across different papers whose last author had that name.
Controlling for each name’s citations, this method tested the demographic effects but did not account for names honored more than once and may be affected by name collisions.</p>
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<meta name="citation_fulltext_html_url" content="https://greenelab.github.io/iscb-diversity-manuscript/" />
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Expand All @@ -81,14 +81,14 @@ manubot-clear-requests-cache: false

_A DOI-citable version of this manuscript is available at <https://doi.org/10.1101/2020.04.14.927251>_.

This version of the manuscript [contains changes](https://github.com/greenelab/iscb-diversity-manuscript/compare/v1.0...d9f643daddfe2cdc806a2abedcbd993b2360c5ec) subsequent to the [version 1.0 release](https://github.com/greenelab/iscb-diversity-manuscript/releases/tag/v1.0).
This version of the manuscript [contains changes](https://github.com/greenelab/iscb-diversity-manuscript/compare/v1.0...f1742982f977553f78dea53f0f3bc5b878f73c52) subsequent to the [version 1.0 release](https://github.com/greenelab/iscb-diversity-manuscript/releases/tag/v1.0).


<small><em>
This manuscript
([permalink](https://greenelab.github.io/iscb-diversity-manuscript/v/d9f643daddfe2cdc806a2abedcbd993b2360c5ec/))
([permalink](https://greenelab.github.io/iscb-diversity-manuscript/v/f1742982f977553f78dea53f0f3bc5b878f73c52/))
was automatically generated
from [greenelab/iscb-diversity-manuscript@d9f643d](https://github.com/greenelab/iscb-diversity-manuscript/tree/d9f643daddfe2cdc806a2abedcbd993b2360c5ec)
from [greenelab/iscb-diversity-manuscript@f174298](https://github.com/greenelab/iscb-diversity-manuscript/tree/f1742982f977553f78dea53f0f3bc5b878f73c52)
on June 10, 2021.
</em></small>

Expand Down Expand Up @@ -597,7 +597,7 @@ $\epsilon \sim N(0, \sigma^2)$ accounts for random variation.
An effect was deemed statistically significant if its corresponding _p_ < $\alpha$ = 0.01.

We emphasize that the units in this analysis are honors and authorships.
Therefore, each row of the input data frame represents either an honor or authorship with the scientist's name's gender probability and its probability from the name origin classifier ($prob$).
Therefore, each row of the input data frame represents either an honor or authorship with the scientist's name's probability value from the gender or name origin classifier ($prob$).
Our rationale was that, if a scientist was honored three times, these three honoree slots represented distinct selections and should be considered separately.
We also performed an alternative approach in which each pair of forename and last name as the unit of measurement and the citations were totaled across different papers whose last author had that name.
Controlling for each name's citations, this method tested the demographic effects but did not account for names honored more than once and may be affected by name collisions.
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Expand Up @@ -24,7 +24,7 @@ Chae
Chak
Chitsaz
citable
curation
Curation
dataset
datasets
dhimmel
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Habib
Haizhou
Hamidreza
heatmap
Heatmap
Hebb
Heejoon
Himmelstein
Expand Down Expand Up @@ -98,7 +98,7 @@ Motieghader
mrgazzara
multiclass
Musoro
NamePrism
nameprism
Nikolaos
Nilsson
Nir
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