Extract BibTeX file

greenelab · Apr 27, 2021 · e43ef6d · e43ef6d
1 parent 7cbfafe
commit e43ef6d
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Showing 3 changed files with 10 additions and 3 deletions.
diff --git a/build/assets/acmart-primary.zip b/build/assets/acmart-primary.zip
diff --git a/build/build.sh b/build/build.sh
@@ -260,11 +260,19 @@ if [ "${BUILD_INDIVIDUAL:-}" = "true" ]; then
       --data-dir="$PANDOC_DATA_DIR" \
       --defaults=latex.yaml \
       --metadata=title:"$INDIVIDUAL_TITLE" \
+      --natbib \
       output/$INDIVIDUAL_KEYWORD/manuscript.md
       mv output/manuscript.tex output/$INDIVIDUAL_KEYWORD-manuscript.tex
 
-    #rm -rf content/$INDIVIDUAL_KEYWORD
-    #rm -rf output/$INDIVIDUAL_KEYWORD
+    # Translate the CSL JSON references Manubot output into BibTeX
+    pandoc --verbose \
+      --from=csljson \
+      --to=bibtex \
+      --output=output/$INDIVIDUAL_KEYWORD.bib \
+      output/$INDIVIDUAL_KEYWORD/references.json
+
+    rm -rf content/$INDIVIDUAL_KEYWORD
+    rm -rf output/$INDIVIDUAL_KEYWORD
   done
 fi
 

diff --git a/build/pandoc/defaults/latex.yaml b/build/pandoc/defaults/latex.yaml
@@ -16,4 +16,3 @@ number-offset: [0,0,0,0,0,0]
 # offset Manubot's use of level-1 headings for the title only
 shift-heading-level-by: -1
 standalone: true
-natbib: true