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README_orphan.md

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##Random Info

Rel restart, login vcellapi
sudo docker service update --force --detach=false vcellrel_activemqint
sudo docker service update --force --detach=false vcellrel_activemqsim
sudo docker service update --force --detach=false vcellrel_mongodb
sudo docker service update --force --detach=false vcellrel_db
sudo docker service update --force --detach=false vcellrel_data
sudo docker service update --force --detach=false vcellrel_sched
sudo docker service update --force --detach=false vcellrel_submit
sudo docker service update --force --detach=false vcellrel_api
sudo docker service update --force --detach=false vcellrel_opt

Alpha restart, login vcellapi-beta
sudo docker service update --force --detach=false vcellalpha_activemqint
sudo docker service update --force --detach=false vcellalpha_activemqsim
sudo docker service update --force --detach=false vcellalpha_mongodb
sudo docker service update --force --detach=false vcellalpha_db
sudo docker service update --force --detach=false vcellalpha_data
sudo docker service update --force --detach=false vcellalpha_sched
sudo docker service update --force --detach=false vcellalpha_submit
sudo docker service update --force --detach=false vcellalpha_api
sudo docker service update --force --detach=false vcellalpha_opt

Build quickrun linux solvers
do this in a pristine checkout (cloned).
git clone https://github.com/virtualcell/vcell-solvers.git
cd vcell-solvers

sudo docker build --tag=frm/vcell-solvers:latest -f Dockerfile-local .
sudo docker run -it --rm -v /Users/schaff/.vcell/simdata/temp:/vcelldata frm/vcell-solvers:latest SundialsSolverStandalone_x64 /vcelldata/SimID_1460763637_0_.cvodeInput /vcelldata/SimID_1460763637_0_.ida
-----where /Users/schaff/.vcell/simdata/temp is the simulation data directory (input file) mapped to /vcelldata inside the Docker container.

useful commands

docker stack services local
ID                  NAME                MODE                REPLICAS            IMAGE                               PORTS
5hrlf3u1kdgr        local_visualizer    replicated          1/1                 dockersamples/visualizer:stable     *:30013->8080/tcp
cflee8p55yph        local_mongodb       replicated          1/1                 schaff/vcell-mongo:7.0.0-alpha.4    *:27020->27017/tcp
evpnt4b10dbs        local_activemq      replicated          1/1                 webcenter/activemq:5.14.3           *:61619->61616/tcp
tpo0wfjmgqeo        local_api           replicated          1/1                 schaff/vcell-api:7.0.0-alpha.4      *:30014->8000/tcp,*:8083->8080/tcp
xkb1tp4znjha        local_master        replicated          1/1                 schaff/vcell-master:7.0.0-alpha.4   *:30012->8000/tcp
docker stack ps local
ID               NAME                   IMAGE                               NODE                    DESIRED STATE   CURRENT STATE           ERROR  PORTS
mlvxxlvxedvh     local_master.1         schaff/vcell-master:7.0.0-alpha.4   linuxkit-025000000001   Running         Running 4 minutes ago
z164vsxiorox     local_api.1            schaff/vcell-api:7.0.0-alpha.4      linuxkit-025000000001   Running         Running 4 minutes ago
y0v50e8r31ce      \_ local_api.1        schaff/vcell-api:7.0.0-alpha.4      linuxkit-025000000001   Shutdown        Shutdown 4 minutes ago
9pjpi1lvi46r     local_visualizer.1     dockersamples/visualizer:stable     linuxkit-025000000001   Running         Running 25 minutes ago
3gdwdlijfxdz     local_mongodb.1        schaff/vcell-mongo:7.0.0-alpha.4    linuxkit-025000000001   Running         Running 26 minutes ago
k2hyfkcyqwpx     local_activemq.1       webcenter/activemq:5.14.3           linuxkit-025000000001   Running         Running 26 minutes ago
w059r4hbdgq9     local_master.1         schaff/vcell-master:7.0.0-alpha.4   linuxkit-025000000001   Shutdown        Shutdown 4 minutes ago
deploy schaff$ docker service ls
ID                  NAME                MODE                REPLICAS            IMAGE                               PORTS
evpnt4b10dbs        local_activemq      replicated          1/1                 webcenter/activemq:5.14.3           *:61619->61616/tcp
tpo0wfjmgqeo        local_api           replicated          1/1                 schaff/vcell-api:7.0.0-alpha.4      *:30014->8000/tcp,*:8083->8080/tcp
xkb1tp4znjha        local_master        replicated          1/1                 schaff/vcell-master:7.0.0-alpha.4   *:30012->8000/tcp
cflee8p55yph        local_mongodb       replicated          1/1                 schaff/vcell-mongo:7.0.0-alpha.4    *:27020->27017/tcp
5hrlf3u1kdgr        local_visualizer    replicated          1/1                 dockersamples/visualizer:stable     *:30013->8080/tcp
docker service logs -f local_api
curl --verbose --insecure "https://vcellapi.cam.uchc.edu/admin/jobs?completed=false&stopped=false&serverId=REL" | jq '.'
(see AdminJobsRestlet for details)