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README.Rmd
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<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r include=FALSE}
knitr::opts_chunk$set(
comment = "#>",
collapse = TRUE,
warning = FALSE,
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# rcromwell
<!-- badges: start -->
[](https://getwilds.github.io/badges/#experimental)
[](https://github.com/getwilds/rcromwell/actions/workflows/R-CMD-check.yaml)
[](https://codecov.io/gh/getwilds/rcromwell)
<!-- badges: end -->
Convenience Tools for Managing WDL Workflows via Cromwell
Cromwell is a scientific workflow engine designed for simplicity and scalability. It's maintained by the [Broad Institute](https://www.broadinstitute.org/). ([docs](https://cromwell.readthedocs.io/en/latest/), [code source](https://github.com/broadinstitute/cromwell)).
`rcromwell` is maintained by the [Fred Hutch Cancer Center Data Science Lab](https://hutchdatascience.org/).
## Installation
You can install the development version of `rcromwell` from [GitHub](https://github.com/) with:
```r
# install.packages("pak")
pak::pak("getwilds/rcromwell")
```
## Documentation
Go to <http://getwilds.org/rcromwell/> for `rcromwell` package documentation. Go to the [Get Started vignette](https://getwilds.org/rcromwell/articles/rcromwell.html) to get started, or [reference page](https://getwilds.org/rcromwell/reference/index.html) for the function documentation.
## Bugs? Features?
Open an issue on our [issue tracker](https://github.com/getwilds/rcromwell/issues/).
## Code of Conduct
Please note that the rcromwell project is released with a [Contributor Code of Conduct](http://getwilds.org/rcromwell/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.
## License
[MIT](LICENSE.md)
## Prior art
- [wdlRunR](https://github.com/seandavi/wdlRunR) - archived package/repo