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CMakeLists.txt
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cmake_minimum_required(VERSION 3.8)
project(recombo)
include_directories(src)
set(CMAKE_CXX_STANDARD 11)
set(EXECUTABLE_OUTPUT_PATH src/bin)
set(TEST_SOURCE_FILES
src/tests/argprocessorTests.cpp
src/tests/argprocessorTests.h
src/tests/autocorrTests.cpp
src/tests/autocorrTests.h
src/tests/basicTests.cpp
src/tests/basicTests.h
src/tests/clkTests.cpp
src/tests/clkTests.h
src/tests/randomTests.cpp
src/tests/randomTests.h
src/tests/recomboCriteriaTests.cpp
src/tests/recomboCriteriaTests.h
src/tests/sampleUnitTests.cpp
src/tests/sampleUnitTests.h
src/tests/testFramework.cpp
src/tests/testFramework.h)
set(SHARED_SOURCE_FILES
src/argprocessor.cpp
src/argprocessor.h
src/autocorr.cpp
src/autocorr.h
src/bfacfProbabilities.cpp
src/bfacfProbabilities.h
src/bfacfProbabilitiesFromZ.cpp
src/bfacfProbabilitiesFromZ.h
src/bfacfProbabilitiesFromZFixed.cpp
src/bfacfProbabilitiesFromZFixed.h
src/clk.cpp
src/clk.h
src/clkCigar.cpp
src/clkCigar.h
src/clkConformationAsList.cpp
src/clkConformationAsList.h
src/clkConformationBfacf3.cpp
src/clkConformationBfacf3.h
src/clkConformationSeqconvert.cpp
src/clkConformationSeqconvert.h
src/conformation.cpp
src/conformation.h
src/conformationAsList.cpp
src/conformationAsList.h
src/conformationWlc.cpp
src/conformationWlc.h
src/genericConformation.h
src/id.cpp
src/id.h
src/legacy.cpp
src/legacy.h
src/legacyBfacf.cpp
src/legacyBfacf.h
src/main.cpp
src/mmchain.cpp
src/mmchain.h
src/polynomesAZ.c
src/polynomesAZ.h
src/pseudorandom.cpp
src/pseudorandom.h
src/recomboArgprocessor.cpp
src/recomboArgprocessor.h
src/recomboFromFile.cpp
src/recomboFromFile.h
src/regularNgon.cpp
src/regularNgon.h
src/runRecombo.cpp
src/runRecombo.h
src/threevector.h
src/zAnalyzer.cpp
src/zAnalyzer.h
config.h)
set(XINGER_SOURCE_FILES
src/xinger/random.cpp
src/xinger/random.h
src/xinger/util.cpp
src/xinger/util.h
src/xinger/xinger.cpp
src/xinger/xinger.h)
add_executable(recomboFromFile ${SHARED_SOURCE_FILES} src/recomboFromFileMain.cpp)
add_executable(xinger ${XINGER_SOURCE_FILES} src/xinger/main.cpp)
add_executable(zAnalyzer ${SHARED_SOURCE_FILES} src/zAnalyzerMain.cpp)
add_executable(unitTest ${SHARED_SOURCE_FILES} ${TEST_SOURCE_FILES} src/tests/unitTestMain.cpp)
add_executable(mmc ${SHARED_SOURCE_FILES} src/mmcMain.cpp)
add_executable(homfly ${SHARED_SOURCE_FILES} src/homfly1_21.c src/cross.c src/cross.h)
add_executable(idknot ${SHARED_SOURCE_FILES} src/idknot.cpp)