A central repository for birth-death models in BEAST 2.
Contributors: Fábio K. Mendes, Rong Zhang
In order to build the bdtree package .jar file:
(1) Clone and build BEAST2 from here;
(2) Clone the bdtree repository side-by-side with the beast2/ directory resulting from step (1);
(3) From bdtree/, type:
$ ant
This command invokes the ant tool, which executes the building instructions inside build.xml. The new bdtree .jar file will be put inside build/dist/.
Below we list all the models contained within bdtree:
Birth-death-sequential-sampling (BDSS)
[ref] Tanja Stadler, Ziheng Yang (2013). Dating phylogenies with sequentially sampled tips. Syst. Biol. 62(5), 674-688.