New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Updated version of edgeR throws "norm factors don't multiply to 1" warnings #13

Open

3 tasks

lianos opened this issue Mar 3, 2020 · 0 comments

Assignees

Member

lianos commented Mar 3, 2020

The edgeR update from 3.28.0 to 3.28.1 included some more sanity checks of library.size on norm.factors columns.

Now many of our unit tests throw warnings about fishy norm.factors:

test-as.FacileDataSet.R:27: warning: exampleFacileDataSet -> DGELists -> as.FacileDataSet norm factors don't multiply to 1
test-assay-normalization.R:18: warning: Normalization of rnaseq data is equivalent to edgeR::cpm norm factors don't multiply to 1
test-bioc-assay-containers.R:(18, 45, 46, 65): warning: fetch_assay_data results converted to DGEList norm factors don't multiply to 1

The text was updated successfully, but these errors were encountered:

lianos self-assigned this

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment