From 4eb6d87fe3536ba6af54986d5507445cb1d9c9b0 Mon Sep 17 00:00:00 2001 From: Frederic Lemoine Date: Tue, 28 Nov 2023 15:56:25 +0100 Subject: [PATCH] Added command gotree ltt : write lineage through time data, and draw plot --- cmd/ltt.go | 108 +++++++++++++++++++++++++++++++++++++++++++++++++++++ go.mod | 25 +++++++++++-- go.sum | 52 ++++++++++++++++++++++++++ 3 files changed, 181 insertions(+), 4 deletions(-) create mode 100644 cmd/ltt.go diff --git a/cmd/ltt.go b/cmd/ltt.go new file mode 100644 index 0000000..4625acf --- /dev/null +++ b/cmd/ltt.go @@ -0,0 +1,108 @@ +package cmd + +import ( + "fmt" + goio "io" + "os" + + "image/color" + + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" + "github.com/spf13/cobra" + "gonum.org/v1/plot" + "gonum.org/v1/plot/font" + "gonum.org/v1/plot/plotter" + "gonum.org/v1/plot/vg" + "gonum.org/v1/plot/vg/draw" +) + +var lttoutimagefile string +var lttoutimagewidth int +var lttoutimageheight int + +// resolveCmd represents the resolve command +var lttCmd = &cobra.Command{ + Use: "ltt", + Short: "Lineage Through Time data", + Long: `Compute Lineage Through Time data. + +Will output data visualizable in statistal packages (R, python, etc.). +Set of x,y coordinates pairs: x: time (or mutations) and y: number of lineages. +`, + RunE: func(cmd *cobra.Command, args []string) (err error) { + var f *os.File + var treefile goio.Closer + var treechan <-chan tree.Trees + var p *plot.Plot + var point *plotter.Scatter + var line *plotter.Line + + if f, err = openWriteFile(outtreefile); err != nil { + io.LogError(err) + return + } + defer closeWriteFile(f, outtreefile) + + if treefile, treechan, err = readTrees(intreefile); err != nil { + io.LogError(err) + return + } + defer treefile.Close() + + if lttoutimagefile != "none" { + p = plot.New() + p.Title.Text = "Lineage through time plot" + p.X.Label.Text = "Time" + p.Y.Label.Text = "Number of lineages" + } + + for tr := range treechan { + if tr.Err != nil { + io.LogError(tr.Err) + return tr.Err + } + ltt := tr.Tree.LTT() + for _, l := range ltt { + f.WriteString(fmt.Sprintf("%d\t%f\t%d\n", tr.Id, l.X, l.Y)) + } + + if lttoutimagefile != "none" { + pts := make(plotter.XYs, len(ltt)) + for i, l := range ltt { + pts[i].X = float64(l.X) + pts[i].Y = float64(l.Y) + } + line, point, err = plotter.NewLinePoints(pts) + point.Shape = draw.CircleGlyph{} + point.Radius = 1 + point.Color = color.RGBA{R: 0, G: 0, B: 255, A: 255} + + //plotutil.AddLinePoints(p, fmt.Sprintf("LTT_%d", tr.Id), pts, draw.CircleGlyph{}) + p.Add(line, point) + p.Legend.Add(fmt.Sprintf("LTT_%d", tr.Id)) + } + } + + if lttoutimagefile != "none" { + // Save the plot to a PNG file. + fmt.Println(font.Length(float64(lttoutimagewidth)) * vg.Inch) + fmt.Println(font.Length(float64(lttoutimageheight)) * vg.Inch) + if err = p.Save(font.Length(lttoutimagewidth)*vg.Inch, font.Length(lttoutimageheight)*vg.Inch, lttoutimagefile); err != nil { + io.LogError(err) + return + } + } + return + }, +} + +func init() { + RootCmd.AddCommand(lttCmd) + lttCmd.PersistentFlags().StringVarP(&intreefile, "input", "i", "stdin", "Input tree(s) file") + lttCmd.PersistentFlags().StringVarP(&outtreefile, "output", "o", "stdout", "LTT output file") + lttCmd.PersistentFlags().StringVar(<toutimagefile, "image", "none", "LTT plot image image output file") + lttCmd.PersistentFlags().IntVar(<toutimagewidth, "image-width", 4, "LTT plot image image output width") + lttCmd.PersistentFlags().IntVar(<toutimageheight, "image-height", 4, "LTT plot image output heigh") + +} diff --git a/go.mod b/go.mod index 1f7b7ed..4dcbbf7 100644 --- a/go.mod +++ b/go.mod @@ -3,7 +3,7 @@ module github.com/evolbioinfo/gotree go 1.19 require ( - github.com/ajstarks/svgo v0.0.0-20210406150507-75cfd577ce75 + github.com/ajstarks/svgo v0.0.0-20211024235047-1546f124cd8b github.com/evolbioinfo/goalign v0.3.7-0.20230906113011-fcecb09f9d43 github.com/fredericlemoine/bitset v1.2.0 github.com/fredericlemoine/cobrashell v0.0.0-20180921081141-49c72f93426c @@ -12,20 +12,37 @@ require ( github.com/jlaffaye/ftp v0.0.0-20210307004419-5d4190119067 github.com/llgcode/draw2d v0.0.0-20210313082411-577c1ead272a github.com/spf13/cobra v1.5.0 - golang.org/x/image v0.7.0 + golang.org/x/image v0.11.0 + gonum.org/v1/plot v0.14.0 ) require ( + gioui.org v0.2.0 // indirect + gioui.org/cpu v0.0.0-20220412190645-f1e9e8c3b1f7 // indirect + gioui.org/shader v1.0.6 // indirect + gioui.org/x v0.2.0 // indirect + git.sr.ht/~sbinet/gg v0.5.0 // indirect github.com/abiosoft/ishell v2.0.0+incompatible // indirect github.com/abiosoft/readline v0.0.0-20180607040430-155bce2042db // indirect + github.com/andybalholm/stroke v0.0.0-20221221101821-bd29b49d73f0 // indirect github.com/armon/go-radix v1.0.0 // indirect + github.com/campoy/embedmd v1.0.0 // indirect github.com/fatih/color v1.10.0 // indirect github.com/flynn-archive/go-shlex v0.0.0-20150515145356-3f9db97f8568 // indirect + github.com/go-fonts/liberation v0.3.1 // indirect + github.com/go-latex/latex v0.0.0-20230307184459-12ec69307ad9 // indirect + github.com/go-pdf/fpdf v0.8.0 // indirect + github.com/go-text/typesetting v0.0.0-20230803102845-24e03d8b5372 // indirect github.com/inconshreveable/mousetrap v1.0.1 // indirect github.com/mattn/go-colorable v0.1.8 // indirect github.com/mattn/go-isatty v0.0.12 // indirect + github.com/pmezard/go-difflib v1.0.0 // indirect github.com/spf13/pflag v1.0.5 // indirect github.com/ulikunitz/xz v0.5.10 // indirect - golang.org/x/sys v0.8.0 // indirect - gonum.org/v1/gonum v0.9.3 // indirect + golang.org/x/exp v0.0.0-20230801115018-d63ba01acd4b // indirect + golang.org/x/exp/shiny v0.0.0-20230801115018-d63ba01acd4b // indirect + golang.org/x/sys v0.11.0 // indirect + golang.org/x/text v0.12.0 // indirect + gonum.org/v1/gonum v0.14.0 // indirect + rsc.io/pdf v0.1.1 // indirect ) diff --git a/go.sum b/go.sum index d5b74ff..a89cb1d 100644 --- a/go.sum +++ b/go.sum @@ -13,6 +13,17 @@ cloud.google.com/go/storage v1.0.0/go.mod h1:IhtSnM/ZTZV8YYJWCY8RULGVqBDmpoyjwiy dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU= dmitri.shuralyov.com/gpu/mtl v0.0.0-20201218220906-28db891af037/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU= gioui.org v0.0.0-20210308172011-57750fc8a0a6/go.mod h1:RSH6KIUZ0p2xy5zHDxgAM4zumjgTw83q2ge/PI+yyw8= +gioui.org v0.2.0 h1:RbzDn1h/pCVf/q44ImQSa/J3MIFpY3OWphzT/Tyei+w= +gioui.org v0.2.0/go.mod h1:1H72sKEk/fNFV+l0JNeM2Dt3co3Y4uaQcD+I+/GQ0e4= +gioui.org/cpu v0.0.0-20210808092351-bfe733dd3334/go.mod h1:A8M0Cn5o+vY5LTMlnRoK3O5kG+rH0kWfJjeKd9QpBmQ= +gioui.org/cpu v0.0.0-20220412190645-f1e9e8c3b1f7 h1:tNJdnP5CgM39PRc+KWmBRRYX/zJ+rd5XaYxY5d5veqA= +gioui.org/cpu v0.0.0-20220412190645-f1e9e8c3b1f7/go.mod h1:A8M0Cn5o+vY5LTMlnRoK3O5kG+rH0kWfJjeKd9QpBmQ= +gioui.org/shader v1.0.6 h1:cvZmU+eODFR2545X+/8XucgZdTtEjR3QWW6W65b0q5Y= +gioui.org/shader v1.0.6/go.mod h1:mWdiME581d/kV7/iEhLmUgUK5iZ09XR5XpduXzbePVM= +gioui.org/x v0.2.0 h1:/MbdjKH19F16auv19UiQxli2n6BYPw7eyh9XBOTgmEw= +gioui.org/x v0.2.0/go.mod h1:rCGN2nZ8ZHqrtseJoQxCMZpt2xrZUrdZ2WuMRLBJmYs= +git.sr.ht/~sbinet/gg v0.5.0 h1:6V43j30HM623V329xA9Ntq+WJrMjDxRjuAB1LFWF5m8= +git.sr.ht/~sbinet/gg v0.5.0/go.mod h1:G2C0eRESqlKhS7ErsNey6HHrqU1PwsnCQlekFi9Q2Oo= github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU= github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo= github.com/OneOfOne/xxhash v1.2.2/go.mod h1:HSdplMjZKSmBqAxg5vPj2TmRDmfkzw+cTzAElWljhcU= @@ -20,11 +31,17 @@ github.com/abiosoft/ishell v2.0.0+incompatible h1:zpwIuEHc37EzrsIYah3cpevrIc8Oma github.com/abiosoft/ishell v2.0.0+incompatible/go.mod h1:HQR9AqF2R3P4XXpMpI0NAzgHf/aS6+zVXRj14cVk9qg= github.com/abiosoft/readline v0.0.0-20180607040430-155bce2042db h1:CjPUSXOiYptLbTdr1RceuZgSFDQ7U15ITERUGrUORx8= github.com/abiosoft/readline v0.0.0-20180607040430-155bce2042db/go.mod h1:rB3B4rKii8V21ydCbIzH5hZiCQE7f5E9SzUb/ZZx530= +github.com/ajstarks/deck v0.0.0-20200831202436-30c9fc6549a9/go.mod h1:JynElWSGnm/4RlzPXRlREEwqTHAN3T56Bv2ITsFT3gY= +github.com/ajstarks/deck/generate v0.0.0-20210309230005-c3f852c02e19/go.mod h1:T13YZdzov6OU0A1+RfKZiZN9ca6VeKdBdyDV+BY97Tk= github.com/ajstarks/svgo v0.0.0-20180226025133-644b8db467af/go.mod h1:K08gAheRH3/J6wwsYMMT4xOr94bZjxIelGM0+d/wbFw= github.com/ajstarks/svgo v0.0.0-20210406150507-75cfd577ce75 h1:tuK1xIp+jrEEF0l3xXab78w89ilYr0Am170KdSml2xc= github.com/ajstarks/svgo v0.0.0-20210406150507-75cfd577ce75/go.mod h1:K08gAheRH3/J6wwsYMMT4xOr94bZjxIelGM0+d/wbFw= +github.com/ajstarks/svgo v0.0.0-20211024235047-1546f124cd8b h1:slYM766cy2nI3BwyRiyQj/Ud48djTMtMebDqepE95rw= +github.com/ajstarks/svgo v0.0.0-20211024235047-1546f124cd8b/go.mod h1:1KcenG0jGWcpt8ov532z81sp/kMMUG485J2InIOyADM= github.com/alecthomas/template v0.0.0-20160405071501-a0175ee3bccc/go.mod h1:LOuyumcjzFXgccqObfd/Ljyb9UuFJ6TxHnclSeseNhc= github.com/alecthomas/units v0.0.0-20151022065526-2efee857e7cf/go.mod h1:ybxpYRFXyAe+OPACYpWeL0wqObRcbAqCMya13uyzqw0= +github.com/andybalholm/stroke v0.0.0-20221221101821-bd29b49d73f0 h1:uF5Q/hWnDU1XZeT6CsrRSxHLroUSEYYO3kgES+yd+So= +github.com/andybalholm/stroke v0.0.0-20221221101821-bd29b49d73f0/go.mod h1:ccdDYaY5+gO+cbnQdFxEXqfy0RkoV25H3jLXUDNM3wg= github.com/armon/circbuf v0.0.0-20150827004946-bbbad097214e/go.mod h1:3U/XgcO3hCbHZ8TKRvWD2dDTCfh9M9ya+I9JpbB7O8o= github.com/armon/consul-api v0.0.0-20180202201655-eb2c6b5be1b6/go.mod h1:grANhF5doyWs3UAsr3K4I6qtAmlQcZDesFNEHPZAzj8= github.com/armon/go-metrics v0.0.0-20180917152333-f0300d1749da/go.mod h1:Q73ZrmVTwzkszR9V5SSuryQ31EELlFMUz1kKyl939pY= @@ -36,6 +53,8 @@ github.com/beorn7/perks v1.0.0/go.mod h1:KWe93zE9D1o94FZ5RNwFwVgaQK1VOXiVxmqh+Ce github.com/bgentry/speakeasy v0.1.0/go.mod h1:+zsyZBPWlz7T6j88CTgSN5bM796AkVf0kBD4zp0CCIs= github.com/bketelsen/crypt v0.0.3-0.20200106085610-5cbc8cc4026c/go.mod h1:MKsuJmJgSg28kpZDP6UIiPt0e0Oz0kqKNGyRaWEPv84= github.com/boombuler/barcode v1.0.0/go.mod h1:paBWMcWSl3LHKBqUq+rly7CNSldXjb2rDl3JlRe0mD8= +github.com/campoy/embedmd v1.0.0 h1:V4kI2qTJJLf4J29RzI/MAt2c3Bl4dQSYPuflzwFH2hY= +github.com/campoy/embedmd v1.0.0/go.mod h1:oxyr9RCiSXg0M3VJ3ks0UGfp98BpSSGr0kpiX3MzVl8= github.com/cespare/xxhash v1.1.0/go.mod h1:XrSqR1VqqWfGrhpAt58auRo0WTKS1nRRg3ghfAqPWnc= github.com/chzyer/logex v1.1.10 h1:Swpa1K6QvQznwJRcfTfQJmTE72DqScAa40E+fbHEXEE= github.com/chzyer/logex v1.1.10/go.mod h1:+Ywpsq7O8HXn0nuIou7OrIPyXbp3wmkHB+jjWRnGsAI= @@ -80,6 +99,8 @@ github.com/ghodss/yaml v1.0.0/go.mod h1:4dBDuWmgqj2HViK6kFavaiC9ZROes6MMH2rRYeME github.com/go-fonts/dejavu v0.1.0/go.mod h1:4Wt4I4OU2Nq9asgDCteaAaWZOV24E+0/Pwo0gppep4g= github.com/go-fonts/latin-modern v0.2.0/go.mod h1:rQVLdDMK+mK1xscDwsqM5J8U2jrRa3T0ecnM9pNujks= github.com/go-fonts/liberation v0.1.1/go.mod h1:K6qoJYypsmfVjWg8KOVDQhLc8UDgIK2HYqyqAO9z7GY= +github.com/go-fonts/liberation v0.3.1 h1:9RPT2NhUpxQ7ukUvz3jeUckmN42T9D9TpjtQcqK/ceM= +github.com/go-fonts/liberation v0.3.1/go.mod h1:jdJ+cqF+F4SUL2V+qxBth8fvBpBDS7yloUL5Fi8GTGY= github.com/go-fonts/stix v0.1.0/go.mod h1:w/c1f0ldAUlJmLBvlbkvVXLAD+tAMqobIIQpmnUIzUY= github.com/go-gl/gl v0.0.0-20180407155706-68e253793080/go.mod h1:482civXOzJJCPzJ4ZOX/pwvXBWSnzD4OKMdH4ClKGbk= github.com/go-gl/glfw v0.0.0-20180426074136-46a8d530c326/go.mod h1:vR7hzQXu2zJy9AVAgeJqvqgH9Q5CA+iKCZ2gyEVpxRU= @@ -87,9 +108,15 @@ github.com/go-gl/glfw v0.0.0-20190409004039-e6da0acd62b1/go.mod h1:vR7hzQXu2zJy9 github.com/go-gl/glfw/v3.3/glfw v0.0.0-20200222043503-6f7a984d4dc4/go.mod h1:tQ2UAYgL5IevRw8kRxooKSPJfGvJ9fJQFa0TUsXzTg8= github.com/go-kit/kit v0.8.0/go.mod h1:xBxKIO96dXMWWy0MnWVtmwkA9/13aqxPnvrjFYMA2as= github.com/go-latex/latex v0.0.0-20210118124228-b3d85cf34e07/go.mod h1:CO1AlKB2CSIqUrmQPqA0gdRIlnLEY0gK5JGjh37zN5U= +github.com/go-latex/latex v0.0.0-20230307184459-12ec69307ad9 h1:NxXI5pTAtpEaU49bpLpQoDsu1zrteW/vxzTz8Cd2UAs= +github.com/go-latex/latex v0.0.0-20230307184459-12ec69307ad9/go.mod h1:gWuR/CrFDDeVRFQwHPvsv9soJVB/iqymhuZQuJ3a9OM= github.com/go-logfmt/logfmt v0.3.0/go.mod h1:Qt1PoO58o5twSAckw1HlFXLmHsOX5/0LbT9GBnD5lWE= github.com/go-logfmt/logfmt v0.4.0/go.mod h1:3RMwSq7FuexP4Kalkev3ejPJsZTpXXBr9+V4qmtdjCk= +github.com/go-pdf/fpdf v0.8.0 h1:IJKpdaagnWUeSkUFUjTcSzTppFxmv8ucGQyNPQWxYOQ= +github.com/go-pdf/fpdf v0.8.0/go.mod h1:gfqhcNwXrsd3XYKte9a7vM3smvU/jB4ZRDrmWSxpfdc= github.com/go-stack/stack v1.8.0/go.mod h1:v0f6uXyyMGvRgIKkXu+yp6POWl0qKG85gN/melR3HDY= +github.com/go-text/typesetting v0.0.0-20230803102845-24e03d8b5372 h1:FQivqchis6bE2/9uF70M2gmmLpe82esEm2QadL0TEJo= +github.com/go-text/typesetting v0.0.0-20230803102845-24e03d8b5372/go.mod h1:evDBbvNR/KaVFZ2ZlDSOWWXIUKq0wCOEtzLxRM8SG3k= github.com/gogo/protobuf v1.1.1/go.mod h1:r8qH/GZQm5c6nD/R0oafs1akxWv10x8SbQlK7atdtwQ= github.com/gogo/protobuf v1.2.1/go.mod h1:hp+jE20tsWTFYpLwKvXlhS1hjn+gTNwPg2I6zVXpSg4= github.com/golang/freetype v0.0.0-20170609003504-e2365dfdc4a0 h1:DACJavvAHhabrF08vX0COfcOBJRhZ8lUbR+ZWIs0Y5g= @@ -243,6 +270,7 @@ github.com/ulikunitz/xz v0.5.10 h1:t92gobL9l3HE202wg3rlk19F6X+JOxl9BBrCCMYEYd8= github.com/ulikunitz/xz v0.5.10/go.mod h1:nbz6k7qbPmH4IRqmfOplQw/tblSgqTqBwxkY0oWt/14= github.com/xiang90/probing v0.0.0-20190116061207-43a291ad63a2/go.mod h1:UETIi67q53MR2AWcXfiuqkDkRtnGDLqkBTpCHuJHxtU= github.com/xordataexchange/crypt v0.0.3-0.20170626215501-b2862e3d0a77/go.mod h1:aYKd//L2LvnjZzWKhF00oedf4jCCReLcmhLdhm1A27Q= +github.com/yuin/goldmark v1.2.1/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74= github.com/yuin/goldmark v1.4.13/go.mod h1:6yULJ656Px+3vBD8DxQVa3kxgyrAnzto9xy5taEt/CY= go.etcd.io/bbolt v1.3.2/go.mod h1:IbVyRI1SCnLcuJnV2u8VeU0CEYM7e686BmAb1XKL+uU= go.opencensus.io v0.21.0/go.mod h1:mSImk1erAIZhrmZN+AvHh14ztQfjbGwt4TtuofqLduU= @@ -257,6 +285,7 @@ golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACk golang.org/x/crypto v0.0.0-20190510104115-cbcb75029529/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI= golang.org/x/crypto v0.0.0-20190605123033-f99c8df09eb5/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI= golang.org/x/crypto v0.0.0-20191011191535-87dc89f01550/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI= +golang.org/x/crypto v0.0.0-20200622213623-75b288015ac9/go.mod h1:LzIPMQfyMNhhGPhUkYOs5KpL4U8rLKemX1yGLhDgUto= golang.org/x/crypto v0.0.0-20210921155107-089bfa567519/go.mod h1:GvvjBRRGRdwPK5ydBHafDWAxML/pGHZbMvKqRZ5+Abc= golang.org/x/exp v0.0.0-20180321215751-8460e604b9de/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= golang.org/x/exp v0.0.0-20180807140117-3d87b88a115f/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= @@ -269,6 +298,10 @@ golang.org/x/exp v0.0.0-20190829153037-c13cbed26979/go.mod h1:86+5VVa7VpoJ4kLfm0 golang.org/x/exp v0.0.0-20191002040644-a1355ae1e2c3/go.mod h1:NOZ3BPKG0ec/BKJQgnvsSFpcKLM5xXVWnvZS97DWHgE= golang.org/x/exp v0.0.0-20191030013958-a1ab85dbe136/go.mod h1:JXzH8nQsPlswgeRAPE3MuO9GYsAcnJvJ4vnMwN/5qkY= golang.org/x/exp v0.0.0-20210220032938-85be41e4509f/go.mod h1:I6l2HNBLBZEcrOoCpyKLdY2lHoRZ8lI4x60KMCQDft4= +golang.org/x/exp v0.0.0-20230801115018-d63ba01acd4b h1:r+vk0EmXNmekl0S0BascoeeoHk/L7wmaW2QF90K+kYI= +golang.org/x/exp v0.0.0-20230801115018-d63ba01acd4b/go.mod h1:FXUEEKJgO7OQYeo8N01OfiKP8RXMtf6e8aTskBGqWdc= +golang.org/x/exp/shiny v0.0.0-20230801115018-d63ba01acd4b h1:sgkbz1SFTsoQIvzTIw45hccUcGocu00QM3qucBYV8b0= +golang.org/x/exp/shiny v0.0.0-20230801115018-d63ba01acd4b/go.mod h1:UH99kUObWAZkDnWqppdQe5ZhPYESUw8I0zVV1uWBR+0= golang.org/x/image v0.0.0-20180708004352-c73c2afc3b81/go.mod h1:ux5Hcp/YLpHSI86hEcLt0YII63i6oz57MZXIpbrjZUs= golang.org/x/image v0.0.0-20190227222117-0694c2d4d067/go.mod h1:kZ7UVZpmo3dzQBMxlp+ypCbDeSB+sBbTgSJuh5dn5js= golang.org/x/image v0.0.0-20190802002840-cff245a6509b/go.mod h1:FeLwcggjj3mMvU+oOTbSwawSJRM1uh48EjtB4UJZlP0= @@ -282,6 +315,8 @@ golang.org/x/image v0.0.0-20210504121937-7319ad40d33e h1:PzJMNfFQx+QO9hrC1GwZ4Bo golang.org/x/image v0.0.0-20210504121937-7319ad40d33e/go.mod h1:FeLwcggjj3mMvU+oOTbSwawSJRM1uh48EjtB4UJZlP0= golang.org/x/image v0.7.0 h1:gzS29xtG1J5ybQlv0PuyfE3nmc6R4qB73m6LUUmvFuw= golang.org/x/image v0.7.0/go.mod h1:nd/q4ef1AKKYl/4kft7g+6UyGbdiqWqTP1ZAbRoV7Rg= +golang.org/x/image v0.11.0 h1:ds2RoQvBvYTiJkwpSFDwCcDFNX7DqjL2WsUgTNk0Ooo= +golang.org/x/image v0.11.0/go.mod h1:bglhjqbqVuEb9e9+eNR45Jfu7D+T4Qan+NhQk8Ck2P8= golang.org/x/lint v0.0.0-20181026193005-c67002cb31c3/go.mod h1:UVdnD1Gm6xHRNCYTkRU2/jEulfH38KcIWyp/GAMgvoE= golang.org/x/lint v0.0.0-20190227174305-5b3e6a55c961/go.mod h1:wehouNa3lNwaWXcvxsM5YxQ5yQlVC4a0KAMCusXpPoU= golang.org/x/lint v0.0.0-20190301231843-5614ed5bae6f/go.mod h1:UVdnD1Gm6xHRNCYTkRU2/jEulfH38KcIWyp/GAMgvoE= @@ -296,6 +331,7 @@ golang.org/x/mod v0.0.0-20190513183733-4bf6d317e70e/go.mod h1:mXi4GBBbnImb6dmsKG golang.org/x/mod v0.1.0/go.mod h1:0QHyrYULN0/3qlju5TqG8bIK38QM8yzMo5ekMj3DlcY= golang.org/x/mod v0.1.1-0.20191105210325-c90efee705ee/go.mod h1:QqPTAvyqsEbceGzBzNggFXnrqF1CaUcvgkdR5Ot7KZg= golang.org/x/mod v0.1.1-0.20191209134235-331c550502dd/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA= +golang.org/x/mod v0.3.0/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA= golang.org/x/mod v0.3.1-0.20200828183125-ce943fd02449/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA= golang.org/x/mod v0.6.0-dev.0.20220419223038-86c51ed26bb4/go.mod h1:jJ57K6gSWd91VN4djpZkiMVwK6gcyfeH4XE8wZrZaV4= golang.org/x/mod v0.8.0/go.mod h1:iBbtSCu2XBx23ZKBPSOrRkjjQPZFPuis4dIYUhu/chs= @@ -313,6 +349,7 @@ golang.org/x/net v0.0.0-20190501004415-9ce7a6920f09/go.mod h1:t9HGtf8HONx5eT2rtn golang.org/x/net v0.0.0-20190503192946-f4e77d36d62c/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg= golang.org/x/net v0.0.0-20190603091049-60506f45cf65/go.mod h1:HSz+uSET+XFnRR8LxR5pz3Of3rY3CfYBVs4xY44aLks= golang.org/x/net v0.0.0-20190620200207-3b0461eec859/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= +golang.org/x/net v0.0.0-20201021035429-f5854403a974/go.mod h1:sp8m0HH+o8qH0wwXwYZr8TS3Oi6o0r6Gce1SSxlDquU= golang.org/x/net v0.0.0-20210226172049-e18ecbb05110/go.mod h1:m0MpNAwzfU5UDzcl9v0D8zg8gWTRqZa9RBIspLL5mdg= golang.org/x/net v0.0.0-20220722155237-a158d28d115b/go.mod h1:XRhObCWvk6IyKnWLug+ECip1KBveYUHfp+8e9klMJ9c= golang.org/x/net v0.6.0/go.mod h1:2Tu9+aMcznHK/AK1HMvgo6xiTLG5rD5rZLDS+rp2Bjs= @@ -324,6 +361,7 @@ golang.org/x/sync v0.0.0-20181108010431-42b317875d0f/go.mod h1:RxMgew5VJxzue5/jJ golang.org/x/sync v0.0.0-20181221193216-37e7f081c4d4/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20190227155943-e225da77a7e6/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20190423024810-112230192c58/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= +golang.org/x/sync v0.0.0-20201020160332-67f06af15bc9/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20220722155255-886fb9371eb4/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.1.0/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sys v0.0.0-20180823144017-11551d06cbcc/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= @@ -343,7 +381,9 @@ golang.org/x/sys v0.0.0-20190624142023-c5567b49c5d0/go.mod h1:h1NjWce9XRLGQEsW7w golang.org/x/sys v0.0.0-20191001151750-bb3f8db39f24/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20200116001909-b77594299b42/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20200223170610-d5e6a3e2c0ae/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= +golang.org/x/sys v0.0.0-20200930185726-fdedc70b468f/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20201119102817-f84b799fce68/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= +golang.org/x/sys v0.0.0-20210119212857-b64e53b001e4/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20210304124612-50617c2ba197/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20210324051608-47abb6519492 h1:Paq34FxTluEPvVyayQqMPgHm+vTOrIifmcYxFBx9TLg= golang.org/x/sys v0.0.0-20210324051608-47abb6519492/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= @@ -354,6 +394,8 @@ golang.org/x/sys v0.5.0 h1:MUK/U/4lj1t1oPg0HfuXDN/Z1wv31ZJ/YcPiGccS4DU= golang.org/x/sys v0.5.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/sys v0.8.0 h1:EBmGv8NaZBZTWvrbjNoL6HVt+IVy3QDQpJs7VRIw3tU= golang.org/x/sys v0.8.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= +golang.org/x/sys v0.11.0 h1:eG7RXZHdqOJ1i+0lgLgCpSXAp6M3LYlAo6osgSi0xOM= +golang.org/x/sys v0.11.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo= golang.org/x/term v0.0.0-20210927222741-03fcf44c2211/go.mod h1:jbD1KX2456YbFQfuXm/mYQcufACuNUgVhRMnK/tPxf8= golang.org/x/term v0.5.0/go.mod h1:jMB1sMXY+tzblOD4FWmEbocvup2/aLOaQEp7JmGp78k= @@ -365,6 +407,8 @@ golang.org/x/text v0.3.5/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ= golang.org/x/text v0.3.7/go.mod h1:u+2+/6zg+i71rQMx5EYifcz6MCKuco9NR6JIITiCfzQ= golang.org/x/text v0.7.0/go.mod h1:mrYo+phRRbMaCq/xk9113O4dZlRixOauAjOtrjsXDZ8= golang.org/x/text v0.9.0/go.mod h1:e1OnstbJyHTd6l/uOt8jFFHp6TRDWZR/bV3emEE/zU8= +golang.org/x/text v0.12.0 h1:k+n5B8goJNdU7hSvEtMUz3d1Q6D/XW4COJSJR6fN0mc= +golang.org/x/text v0.12.0/go.mod h1:TvPlkZtksWOMsz7fbANvkp4WM8x/WCo/om8BMLbz+aE= golang.org/x/time v0.0.0-20181108054448-85acf8d2951c/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ= golang.org/x/time v0.0.0-20190308202827-9d24e82272b4/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ= golang.org/x/tools v0.0.0-20180221164845-07fd8470d635/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= @@ -390,18 +434,24 @@ golang.org/x/tools v0.0.0-20191112195655-aa38f8e97acc/go.mod h1:b+2E5dAYhXwXZwtn golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo= golang.org/x/tools v0.0.0-20200117012304-6edc0a871e69/go.mod h1:TB2adYChydJhpapKDTa4BR/hXlZSLoq2Wpct/0txZ28= golang.org/x/tools v0.0.0-20200207183749-b753a1ba74fa/go.mod h1:TB2adYChydJhpapKDTa4BR/hXlZSLoq2Wpct/0txZ28= +golang.org/x/tools v0.1.0/go.mod h1:xkSsbof2nBLbhDlRMhhhyNLN/zl3eTqcnHD5viDpcZ0= golang.org/x/tools v0.1.12/go.mod h1:hNGJHUnrk76NpqgfD5Aqm5Crs+Hm0VOH/i9J2+nxYbc= golang.org/x/tools v0.6.0/go.mod h1:Xwgl3UAJ/d3gWutnCtw505GrjyAbvKui8lOU390QaIU= golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0= golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0= +golang.org/x/xerrors v0.0.0-20200804184101-5ec99f83aff1/go.mod 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h1:+LBDVFYwFe4LHhdP8coW6296MBEY4nQ+Y4vuUpJopcE= +gonum.org/v1/plot v0.14.0/go.mod h1:MLdR9424SJed+5VqC6MsouEpig9pZX2VZ57H9ko2bXU= google.golang.org/api v0.4.0/go.mod h1:8k5glujaEP+g9n7WNsDg8QP6cUVNI86fCNMcbazEtwE= google.golang.org/api v0.7.0/go.mod h1:WtwebWUNSVBH/HAw79HIFXZNqEvBhG+Ra+ax0hx3E3M= google.golang.org/api v0.8.0/go.mod h1:o4eAsZoiT+ibD93RtjEohWalFOjRDx6CVaqeizhEnKg= @@ -440,5 +490,7 @@ honnef.co/go/tools v0.0.0-20190102054323-c2f93a96b099/go.mod h1:rf3lG4BRIbNafJWh honnef.co/go/tools v0.0.0-20190106161140-3f1c8253044a/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4= honnef.co/go/tools v0.0.0-20190418001031-e561f6794a2a/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4= honnef.co/go/tools v0.0.1-2019.2.3/go.mod h1:a3bituU0lyd329TUQxRnasdCoJDkEUEAqEt0JzvZhAg= +honnef.co/go/tools v0.1.3/go.mod h1:NgwopIslSNH47DimFoV78dnkksY2EFtX0ajyb3K/las= rsc.io/binaryregexp v0.2.0/go.mod h1:qTv7/COck+e2FymRvadv62gMdZztPaShugOCi3I+8D8= +rsc.io/pdf v0.1.1 h1:k1MczvYDUvJBe93bYd7wrZLLUEcLZAuF824/I4e5Xr4= rsc.io/pdf v0.1.1/go.mod h1:n8OzWcQ6Sp37PL01nO98y4iUCRdTGarVfzxY20ICaU4=