Protein identifier	Contig id	Start	Stop	Strand	Gene symbol	Sequence name	Scope	Element type	Element subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference sequence	% Identity to reference sequence	Alignment length	Accession of closest sequence	Name of closest sequence	HMM id	HMM description
NA	contig05	237	1224	-	23S_A2058A	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	POINTN	988	2905	34.01	81.08	1004	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig05	237	1224	-	23S_C2611C	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	ERYTHROMYCIN/TELITHROMYCIN	POINTN	988	2905	34.01	81.08	1004	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig05	237	1224	-	23S_G2057G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MULTIDRUG	CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN	POINTN	988	2905	34.01	81.08	1004	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig05	237	1224	-	23S_G2447G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	OXAZOLIDINONE	LINEZOLID	POINTN	988	2905	34.01	81.08	1004	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig05	237	1224	-	23S_T2609T	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	TELITHROMYCIN	POINTN	988	2905	34.01	81.08	1004	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig14	1	1089	+	pmrB_A159A	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_E121E	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_E166E	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_G206G	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_L10L	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_L14L	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_P94P	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_T147T	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_T156T	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1	1089	+	pmrB_V161V	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_A159A	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_E121E	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_E166E	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_G206G	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_L10L	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_L14L	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_P94P	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_T147T	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_T156T	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	1093	2181	+	pmrB_V161V	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_A159A	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_C84C	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_E121E	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_E166E	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_G206G	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_L10L	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_L14L	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_P94P	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_T147T	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_T156T	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig14	2185	3273	+	pmrB_V161V	two-component system sensor histidine kinase PmrB [WILDTYPE]	core	AMR	POINT	COLISTIN	COLISTIN	EXACTX	363	363	100.00	100.00	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
NA	contig15	1	2905	+	23S_A2058T	Escherichia azithromycin/erythromycin/telithromycin resistant 23S	core	AMR	POINT	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	1	2905	+	23S_C2611C	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	1	2905	+	23S_G2032G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	LINCOSAMIDE/OXAZOLIDINONE	CLINDAMYCIN/LINEZOLID	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	1	2905	+	23S_G2032G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE/OXAZOLIDINONE	CLARITHROMYCIN/LINEZOLID	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	1	2905	+	23S_G2032G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	OXAZOLIDINONE	LINEZOLID	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	1	2905	+	23S_G2057G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MULTIDRUG	CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	1	2905	+	23S_G2447G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	OXAZOLIDINONE	LINEZOLID	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	1	2905	+	23S_T2609T	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	TELITHROMYCIN	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	1	2905	+	23S_T754T	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	2906	5810	+	23S_A2058A	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	2906	5810	+	23S_C2611C	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	2906	5810	+	23S_G2032G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	LINCOSAMIDE/OXAZOLIDINONE	CLINDAMYCIN/LINEZOLID	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	2906	5810	+	23S_G2032G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE/OXAZOLIDINONE	CLARITHROMYCIN/LINEZOLID	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	2906	5810	+	23S_G2032G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	OXAZOLIDINONE	LINEZOLID	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	2906	5810	+	23S_G2057G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MULTIDRUG	CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	2906	5810	+	23S_G2447G	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	OXAZOLIDINONE	LINEZOLID	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	2906	5810	+	23S_T2609T	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	TELITHROMYCIN	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig15	2906	5810	+	23S_T754T	Escherichia 23S ribosomal RNA [WILDTYPE]	core	AMR	POINT	MACROLIDE	ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	100.00	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
NA	contig16	1	720	+	nfsA_E223E	nitroreductase NfsA [WILDTYPE]	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
NA	contig16	1	720	+	nfsA_G131G	nitroreductase NfsA [WILDTYPE]	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
NA	contig16	1	720	+	nfsA_K141STOP	Escherichia nitrofurantoin resistant NfsA	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
NA	contig16	1	720	+	nfsA_Q44Q	nitroreductase NfsA [WILDTYPE]	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
NA	contig16	1	720	+	nfsA_R133R	nitroreductase NfsA [WILDTYPE]	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
NA	contig16	1	720	+	nfsA_R15C	Escherichia nitrofurantoin resistant NfsA	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
NA	contig16	1	720	+	nfsA_R203R	nitroreductase NfsA [WILDTYPE]	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
NA	contig16	1	720	+	nfsA_S33S	nitroreductase NfsA [WILDTYPE]	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA
NA	contig17	1	247	+	ampC_C-11C	Escherichia ampC/blaEC promoter region [WILDTYPE]	core	AMR	POINT	BETA-LACTAM	CEPHALOSPORIN	POINTN	247	245	100.00	99.19	247	NZ_CP041538.1:1149245-1149489	ampC/blaEC promoter region	NA	NA
NA	contig17	1	247	+	ampC_C-42C	Escherichia ampC/blaEC promoter region [WILDTYPE]	core	AMR	POINT	BETA-LACTAM	CEPHALOSPORIN	POINTN	247	245	100.00	99.19	247	NZ_CP041538.1:1149245-1149489	ampC/blaEC promoter region	NA	NA
NA	contig17	1	247	+	ampC_G-15G	Escherichia ampC/blaEC promoter region [WILDTYPE]	core	AMR	POINT	BETA-LACTAM	CEPHALOSPORIN	POINTN	247	245	100.00	99.19	247	NZ_CP041538.1:1149245-1149489	ampC/blaEC promoter region	NA	NA
NA	contig17	1	247	+	ampC_T-14T	Escherichia ampC/blaEC promoter region [WILDTYPE]	core	AMR	POINT	BETA-LACTAM	CEPHALOSPORIN	POINTN	247	245	100.00	99.19	247	NZ_CP041538.1:1149245-1149489	ampC/blaEC promoter region	NA	NA
NA	contig17	1	247	+	ampC_T-14TGT	Escherichia cephalosporin resistant ampC	core	AMR	POINT	BETA-LACTAM	CEPHALOSPORIN	POINTN	247	245	100.00	99.19	247	NZ_CP041538.1:1149245-1149489	ampC/blaEC promoter region	NA	NA
NA	contig17	1	247	+	ampC_T-32T	Escherichia ampC/blaEC promoter region [WILDTYPE]	core	AMR	POINT	BETA-LACTAM	CEPHALOSPORIN	POINTN	247	245	100.00	99.19	247	NZ_CP041538.1:1149245-1149489	ampC/blaEC promoter region	NA	NA