CUBI Toolkit

Tooling for connecting GitLab, pipelines, and SODAR at CUBI.

Getting Started

Prerequisites when using conda:

$ conda create -n cubi-tk python=3.7
$ conda activate cubi-tk

Clone CUBI-TK and install.

$ git clone git@github.com:bihealth/cubi-tk.git
$ cd cubi-tk
$ pip install -e .

$ pip install -r requirements/develop.txt
$ cd docs_manual
$ make clean html
$ ls _build/html/index.html

$ cat >>~/.bashrc <<"EOF"
eval "$(register-python-argcomplete cubi-tk)"
EOF