From a66dc2318c48e1e02d046c4f5c372acdf3b851d0 Mon Sep 17 00:00:00 2001 From: James Li Date: Sun, 22 Dec 2024 00:16:30 -0500 Subject: [PATCH 1/2] remove reference to sam --- docs/documentation/user_guide/inputdata.rst | 8 -------- 1 file changed, 8 deletions(-) diff --git a/docs/documentation/user_guide/inputdata.rst b/docs/documentation/user_guide/inputdata.rst index b02d5ee..c713524 100644 --- a/docs/documentation/user_guide/inputdata.rst +++ b/docs/documentation/user_guide/inputdata.rst @@ -4,14 +4,6 @@ Input Data **FinaleToolkit** is compatible with almost any paired-end sequence data. -SAM -^^^^^^^^^^^ - -A sequence alignment map (SAM) file is a human-readable file format that stores -the results of sequence alignment. 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  • Input Data
      -
    • SAM
    • BAM
    • CRAM
    • Fragment File
      • diff --git a/docs/_build/html/documentation/user_guide/inputdata.html b/docs/_build/html/documentation/user_guide/inputdata.html index a328b62..7ff5f38 100644 --- a/docs/_build/html/documentation/user_guide/inputdata.html +++ b/docs/_build/html/documentation/user_guide/inputdata.html @@ -357,13 +357,6 @@

      Input Data#

      FinaleToolkit is compatible with almost any paired-end sequence data.

      -
      -

      SAM#

      -

      A sequence alignment map (SAM) file is a human-readable file format that stores -the results of sequence alignment. It contains information about the alignment -of each read to the reference genome, as well as information about the read -itself.

      -

      BAM#

      A binary alignment file (BAM) that stores the results of sequence alignment. @@ -462,7 +455,6 @@

      Fragment File
        -
      • SAM
      • BAM
      • CRAM
      • Fragment File
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