diff --git a/changelogs/current.yaml b/changelogs/current.yaml
index 9ecf0d6e48ce..ab766f2e8138 100644
--- a/changelogs/current.yaml
+++ b/changelogs/current.yaml
@@ -8,6 +8,9 @@ minor_behavior_changes:
 
 bug_fixes:
 # *Changes expected to improve the state of the world and are unlikely to have negative effects*
+- area: jwt_authn
+  change: |
+    Fixed JWT extractor, which concatenated headers with a comma, resultig in invalid tokens.
 
 removed_config_or_runtime:
 # *Normally occurs at the end of the* :ref:`deprecation period <deprecated>`
diff --git a/source/extensions/filters/http/jwt_authn/extractor.cc b/source/extensions/filters/http/jwt_authn/extractor.cc
index 805af897a612..da5083026b82 100644
--- a/source/extensions/filters/http/jwt_authn/extractor.cc
+++ b/source/extensions/filters/http/jwt_authn/extractor.cc
@@ -253,20 +253,21 @@ ExtractorImpl::extract(const Http::RequestHeaderMap& headers) const {
   for (const auto& location_it : header_locations_) {
     const auto& location_spec = location_it.second;
     ENVOY_LOG(debug, "extract {}", location_it.first);
-    const auto result =
-        Http::HeaderUtility::getAllOfHeaderAsString(headers, location_spec->header_);
-    if (result.result().has_value()) {
-      auto value_str = result.result().value();
-      if (!location_spec->value_prefix_.empty()) {
-        const auto pos = value_str.find(location_spec->value_prefix_);
-        if (pos == absl::string_view::npos) {
-          // value_prefix not found anywhere in value_str, so skip
-          continue;
+    auto header_value = headers.get(location_spec->header_);
+    if (!header_value.empty()) {
+      for (size_t i = 0; i < header_value.size(); i++) {
+        auto value_str = header_value[i]->value().getStringView();
+        if (!location_spec->value_prefix_.empty()) {
+          const auto pos = value_str.find(location_spec->value_prefix_);
+          if (pos == absl::string_view::npos) {
+            // value_prefix not found anywhere in value_str, so skip
+            continue;
+          }
+          value_str = extractJWT(value_str, pos + location_spec->value_prefix_.length());
         }
-        value_str = extractJWT(value_str, pos + location_spec->value_prefix_.length());
+        tokens.push_back(std::make_unique<const JwtHeaderLocation>(
+            std::string(value_str), location_spec->issuer_checker_, location_spec->header_));
       }
-      tokens.push_back(std::make_unique<const JwtHeaderLocation>(
-          std::string(value_str), location_spec->issuer_checker_, location_spec->header_));
     }
   }
 
diff --git a/test/extensions/filters/http/jwt_authn/extractor_test.cc b/test/extensions/filters/http/jwt_authn/extractor_test.cc
index b639a0701619..3cad76fe54a9 100644
--- a/test/extensions/filters/http/jwt_authn/extractor_test.cc
+++ b/test/extensions/filters/http/jwt_authn/extractor_test.cc
@@ -143,6 +143,30 @@ TEST_F(ExtractorTest, TestDefaultHeaderLocationWithValidJWT) {
   EXPECT_TRUE(tokens[0]->isIssuerAllowed("issuer1"));
 }
 
+TEST_F(ExtractorTest, TestDuplicatedHeadersWithDuplicatedTokenPrefixes) {
+  auto headers = TestRequestHeaderMapImpl{{"Authorization", absl::StrCat("Bearer ", GoodToken)},
+                                          {"Authorization", absl::StrCat("Bearer ", GoodToken)}};
+  auto tokens = extractor_->extract(headers);
+  EXPECT_EQ(tokens.size(), 2);
+
+  // Only the issue1 is using default header location.
+  EXPECT_EQ(tokens[0]->token(), GoodToken);
+  EXPECT_TRUE(tokens[0]->isIssuerAllowed("issuer1"));
+  EXPECT_EQ(tokens[1]->token(), GoodToken);
+  EXPECT_TRUE(tokens[1]->isIssuerAllowed("issuer1"));
+}
+
+TEST_F(ExtractorTest, TestDuplicatedHeadersWithUniqueTokenPrefixes) {
+  auto headers = TestRequestHeaderMapImpl{{"Authorization", absl::StrCat("Bearer ", GoodToken)},
+                                          {"Authorization", absl::StrCat("Basic ", "basic")}};
+  auto tokens = extractor_->extract(headers);
+  EXPECT_EQ(tokens.size(), 1);
+
+  // Only the issue1 is using default header location.
+  EXPECT_EQ(tokens[0]->token(), GoodToken);
+  EXPECT_TRUE(tokens[0]->isIssuerAllowed("issuer1"));
+}
+
 // Test extracting JWT as Bearer token from the default header location: "Authorization" -
 // using an actual (correctly-formatted) JWT but token is invalid, like: GoodToken +
 // chars_after_space expected to get all token include characters after the space:
@@ -203,12 +227,13 @@ TEST_F(ExtractorTest, TestCustomHeaderToken) {
   EXPECT_FALSE(headers.has(Http::LowerCaseString("token-header")));
 }
 
-// Make sure a double custom header concatenates the token
+// Make sure a double custom header does not concatenate the token
 TEST_F(ExtractorTest, TestDoubleCustomHeaderToken) {
   auto headers = TestRequestHeaderMapImpl{{"token-header", "jwt_token"}, {"token-header", "foo"}};
   auto tokens = extractor_->extract(headers);
-  EXPECT_EQ(tokens.size(), 1);
-  EXPECT_EQ(tokens[0]->token(), "jwt_token,foo");
+  EXPECT_EQ(tokens.size(), 2);
+  EXPECT_EQ(tokens[0]->token(), "jwt_token");
+  EXPECT_EQ(tokens[1]->token(), "foo");
 }
 
 // Test extracting token from the custom header: "prefix-header"