networkx2.4: Graph Object methods removed

[aschmiedeke]

When running FilFinder (version 1.6) I got the following AttributeError message:

  File "/usr/local/lib/python3.7/dist-packages/fil_finder/filfinder2D.py", line 641, in analyze_skeletons
    max_prune_iter=max_prune_iter)
  File "/usr/local/lib/python3.7/dist-packages/fil_finder/filament.py", line 286, in skeleton_analysis
    if prev_G.node == G[0].node:
AttributeError: 'Graph' object has no attribute 'node'

Changing line 286 in filament.py from
if prev_G.node == G[0].node:
to
if prev_G.nodes == G[0].nodes:
solved the problem for me.

See also https://networkx.github.io/documentation/stable/release/release_2.4.html#deprecations

[e-koch]

Thanks! This is fixed in master. I'll push a new release soon, but in the meantime, you can install the fixed version with pip install git+https://github.com/e-koch/FilFinder.git@master.

[aschmiedeke]

Sorry for the late reply! I installed the fixed version and things are running fine! Thank you!

[e-koch]

I've released v1.7 on pip that includes this fix.