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dd_surv_act_arthro_source.R
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# @@@@@@@@@@@@@@@@@@@@@@ #
# Arthropod Source Metadata #
# @@@@@@@@@@@@@@@@@@@@@@ #
arthro_source<-
list(
data.frame(
Variable="SurveillanceActivityArthropodSourceNumber",
Label="Surveillance Activity Arthropod Source Number",
Definition="The full number of Arthropod Sources targeted in the
Surveillance Activity",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourcesRecordsIncluded",
Label="Surveillance Activity New Arthropod Source Records Included",
Definition="Answer to the question: 'Are new Arthropod Source Records part of the
Surveillance Activity (e.g., new collection of data from Arthropod Sources)?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceCodeStructure",
Label="Surveillance Activity New Arthropod Source Code Structure",
Definition="Explain the nomenclature of the new Arthropod Source Codes of the
Surveillance Activity (e.g., 'first letter refers to the pathogen, the next
two letters refer to the country, the next letter refers to the taxonomic group,
and then the number is the sequential number of the Arthropod Source')",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationPreviousSurveillanceActivities",
Label="Surveillance Activity Arthropod Source Locations in Previous Surveillance Activities",
Definition="Answer to the question: 'Have any of the Locations where
Arthropod Source are placed in the Surveillance Activity been included in previous
Suveillance Activities",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationPreviousProjectCodes",
Label="Surveillance Activity Arthropod Source Locations in Previous Project Codes",
Definition="The codes of previous Projects containing the Locations where
Arthropod Source are placed in the current Surveillance Activity",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationPreviousSurveillanceActivitiesCodes",
Label="Surveillance Activity Arthropod Source Locations in Previous Surveillance Activities",
Definition="The codes of previous Surveillance Activities containing the Locations where
Arthropod Source are placed in the current Surveillance Activities ",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationUnitOfInterest",
Label="Surveillance Activity Arthropod Source Location Unit of Interest",
Definition="Answer to the question: 'Are the Locations where Arthropod Source
are placed a unit of interest in the Surveillance Activity (e.g., parcels where
water is collected from)?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationDefinition",
Label="Surveillance Activity Arthropod Source Location Definition",
Definition="Description of what the Locations where Arthropod Sources are
placed represent (e.g., a parcel, an zone of a proteced area, a city, etc.)",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationList",
Label="Surveillance Activity Arthropod Source Location List",
Definition="A list with the Location names or codes where Arthropod Sources
are placed in the Surveillance Activity",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationSpatialFileProvided",
Label="Surveillance Activity Arthropod Source Location Spatial File Provided",
Definition="Answer to the question: 'Has a file with the spatial data and other
relevant attributes of the Locations where Arthropod Source
are placed in the Surveillance Activity been provided?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationPolygonProjection",
Label="Surveillance Activity Arthropod Source Location Polygon Projection",
Definition="The projection of the spatial data of the Locations in the file
provided",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationOtherAttributes",
Label="Surveillance Activity Arthropod Source Location Other Attributes",
Definition="Answer to the question: 'Does the Surveillance Activity involve tracking
other properties of the Locations where Arthropod Sources are placed
not included in the the data model?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceLocationListDefinitionOtherAttributes",
Label="Surveillance Activity Arthropod Source Location Definition Other Attributes",
Definition="Description of the other attributes of Locations where Arthropod Sources
are placed not included in the data model. Provide a list with the
name of the attributes and their definition",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePlannedVisitsPerLocation",
Label="Surveillance Activity Arthropod Source Planned Visits Per Location",
Definition="The number of planned visits per Location where Arthropod Source
are placed in the Surveillance Activity. An unknown number,
'at least X', or 'at most X' are accepted resposes",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceEventNumberPerLocationKnown",
Label="Surveillance Activity Arthropod Source Event Number Per Location Known",
Definition="Answer to the question: 'Is the total number of Events per Location where
new Arthropod Source Records are obtained from during the Surveillance Activity known?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceEventNumberPerLocation",
Label="Surveillance Activity Arthropod Source Event Number Per Location",
Definition="The total number of Events per Location where
new Arthropod Source Records are obtained from during the Surveillance Activity.
An unknown number, 'at least X', or 'at most X' are accepted resposes",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceCollectionNumberPerLocationKnown",
Label="Surveillance Activity Arthropod Source Collection Number Per Location Known",
Definition="Answer to the question: 'Is the total number of Collections per Location where
new Arthropod Source Records are obtained from during the Surveillance Activity known?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceCollectionNumberPerLocation",
Label="Surveillance Activity Arthropod Source Collection Number Per Location",
Definition="the total number of Collections per Location where
new Arthropod Source Records are obtained from during the Surveillance Activity.
An unknown number, 'at least X', or 'at most X' are accepted resposes",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceNumberPerLocationKnown",
Label="Surveillance Activity Arthropod Source Number Per Location Known",
Definition="Answer to the question: 'Is the total number of Arthropod Source
per Location included in the Surveillance Activity known?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceNumberPerLocation",
Label="Surveillance Activity Arthropod Source Number Per Location",
Definition="The total number of Arthropod Sources per Location included
in the Surveillance Activity. An unknown number, 'at least X', or 'at most X'
are accepted resposes",
Type="String",
Mandatory="Yes"),
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordsNumberPerLocationKnown",
# Label="Surveillance Activity New Arthropod Source Records Number Per Location Known",
# Definition="Answer to the question: 'Is the total number of Arthropod Source Records
# targeted per Location where new Arthropod Source Records are obtained from during
# the Surveillance Activity known?'",
# Type="Boolean",
# Mandatory="Yes"),
#
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordsNumberPerLocation",
# Label="Surveillance Activity New Arthropod Source Records Number Per Location",
# Definition="The total number of Arthropod Source Records targeted per Location
# where new Arthropod Source Records are obtained from during the Surveillance Activity.
# An unknown number, 'at least X', or 'at most X' are accepted resposes",
# Type="String",
# Mandatory="Yes"),
#
data.frame(
Variable="SurveillanceActivityArthropodSourceNumberPerVisitPerLocationKnown",
Label="Surveillance Activity Arthropod Source Number Per Visit to a Location Known",
Definition="Answer to the question: 'Is the number of Arthropod Sources to be included
per visit to each Location where Arthropod Sources are placed during
the Surveillance Activity known?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePerVisitPerLocation",
Label="Surveillance Activity Arthropod Source Per Visit per Location",
Definition="The number of Arthropod Sources to be included per visit to each
Location where Arthropod Sources are placed during the Surveillance Activity.
An unknown number, 'at least X', or 'at most X' are accepted resposes",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceEventDefinition",
Label="Surveillance Activity Arthropod Source Event Definition",
Definition="Description of what the Events where Arthropod Source Records
are collected from (e.g., a house, a cave, a tree, etc.)",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodEventIncludesAnimalSources",
Label="Surveillance Activity Event Arthropod Source Includes Animal Sources",
Definition="Answer to the question: Do Events with Arthropod Source records
include Records of Animal Sources?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodEventIncludesGroupSources",
Label="Surveillance Activity Event Arthropod Source Includes Group Sources",
Definition="Answer to the question: Do Events with Arthropod Source records
include Records of Group Sources?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodEventIncludesEnvironmentalSources",
Label="Surveillance Activity Event Arthropod Source Event Includes Environmental Sources",
Definition="Answer to the question: Do Events with Arthropod Source records
include Records of Environmental Sources?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodEventOtherAttributes",
Label="Surveillance Activity Event Arthropod Source Other Attributes",
Definition="Answer to the question: 'Are there other properties of interest of the
Events containing Arthropod Source Records that are not include in the the data model?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodEventListDefinitionOtherAttributes",
Label="Surveillance Activity Event Arthropod Source Definition Other Attributes",
Definition="Description of other attributes of interest for the Events containing
Arthropod Source Records not included in the data model?'",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceCollectionNumberPerEventKnown",
Label="Surveillance Activity Arthropod Source Collection Number Per Event Known",
Definition="Answer to the question: 'Is the total number of Collections
targeting Arthropod Sources per Event known?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceCollectionNumberPerEvent",
Label="Surveillance Activity Arthropod Source Collection Number Per Event",
Definition="The total number of Collections targeting Arthropod Sources per Event.
An unknown number, 'at least X', or 'at most X' are accepted resposes",
Type="String",
Mandatory="Yes"),
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordsNumberPerEventKnown",
# Label="Surveillance Activity New Arthropod Source Records Number Per Event Known",
# Definition="Answer to the question: 'Is the total number of Arthropod Source Records
# targeted per Event known?",
# Type="Boolean",
# Mandatory="Yes"),
#
#
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordsNumberPerEvent",
# Label="Surveillance Activity New Arthropod Source Records Number Per Event",
# Definition="The total number of Arthropod Source Records targeted per Event.
# An unknown number, 'at least X', or 'at most X' are accepted resposes",
# Type="String",
# Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePassiveCollection",
Label="Surveillance Activity Arthropod Source Passive Collection",
Definition="Answer to the question:'Are Arthropod Source Records obtained through a
passive collection strategy (e.g., citizen reports, information from news outlets)?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePassiveCollectionTargetedSpecies",
Label="Surveillance Activity Arthropod Source Passive Collection Targeted Species",
Definition="The arthropod species targeted through passive Collection in the
Surveillance Activity",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePassiveCollectionTargetedDevelopmentStage",
Label="Surveillance Activity Arthropod Source Passive Collection Targeted Development Stage",
Definition="The development stage of the arthropod species targeted through passive Collection in the
Surveillance Activity",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePassiveCollectionMethod",
Label="Surveillance Activity Arthropod Source Passive Collection Method",
Definition="Description of the methods to collect arthropods passively during the
Surveillance Activity",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePassiveCollectionLure",
Label="Surveillance Activity Arthropod Source Passive Collection Lure",
Definition="Answer to the question: 'Any lure used in the passive Collection methods?'",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePassiveCollectionLureType",
Label="Surveillance Activity Arthropod Source Passive Collection Lure",
Definition="The types of lure used in the passive Collection methods",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceActiveCollection",
Label="Surveillance Activity Arthropod Source Active Collection",
Definition="Answer to the question:'Are Arthropod Source Records obtained through an
active collection strategy (e.g., camera traps, mosquito traps, patrolling, transect,
mist nets, observation periods, land exploration, etc.)?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceActiveCollectionTargetedSpecies",
Label="Surveillance Activity Arthropod Source Active Collection Targeted Species",
Definition="The arthropod species targeted through active Collection in the
Surveillance Activity",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceActiveCollectionTargetedDevelopmentStage",
Label="Surveillance Activity Arthropod Source Active Collection Targeted Development Stage",
Definition="The development stage of the arthropod species targeted through active Collection in the
Surveillance Activity",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceActiveCollectionMethod",
Label="Surveillance Activity Arthropod Source Active Collection Method",
Definition="Description of the Collection methods used to actively obtain new
Arthropod Source Records (e.g., pair of mist nets placed in X for Y hours in S
sites every M months under a bat roost ans blood samples re collected using ... etc.)",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceActiveCollectionTrapTypes",
Label="Surveillance Activity Arthropod Source Active Collection Trap Types",
Definition="The traps types used to actively collect arthropods in the
Surveillance Activity",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceActiveCollectionLure",
Label="Surveillance Activity Arthropod Source Active Collection Lure",
Definition="Answer to the question: 'Any lure used in the active Collection methods?'",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceActiveCollectionLureType",
Label="Surveillance Activity Arthropod Source Active Collection Lure",
Definition="The types of lure used in the active Collection methods",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceActiveCollectionMethodReferences",
Label="Surveillance Activity Arthropod Active Source Collection Method References",
Definition="Name the references supporting the methods used to actively collect the
arthropods",
Type="String",
Mandatory="No"),
data.frame(
Variable="SurveillanceActivityArthropodSourceActiveCollectionMethodExpectedEffort",
Label="Surveillance Activity Arthropod Source Active Collection Expected Effort",
Definition="Expected Effort of the active Collection Methods to obtain Arthropod
Source Records",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceCollectionRecordsOtherSourceTypes",
Label="Surveillance Activity Arthropod Source Collection Records Other Source Types",
Definition="Answer to the question: 'Do Collections targeting arthropods
also target other Source types?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceCollectionOtherAttributes",
Label="Surveillance Activity Arthropod Source Collection Other Attributes",
Definition="Answer to the question: 'Does the Surveillance Activity involve tracking
other properties of Collections to obtain Arthropod Source Records not included in the
data model?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceCollectionListDefinitionOtherAttributes",
Label="Surveillance Activity Arthropod Source Collection Definition Other Attributes",
Definition="Description of other attributes of interest for the Collections targeting
Arthropod Source Records not included in the data model. Provide a list with the name
of the attributes and their definition",
Type="String",
Mandatory="Yes"),
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordsNumberPerCollectionKnown",
# Label="Surveillance Activity New Arthropod Source Records Number Per Collection Known",
# Definition="Answer to the question: 'Is the number of Arthropod Source Records per
# Collection targeting Arthropod Sources known?",
# Type="Boolean",
# Mandatory="Yes"),
#
#
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordsNumberPerCollection",
# Label="Surveillance Activity New Arthropod Source Records Number Per Collection",
# Definition="The total number of Arthropod Sources Records per Collection.
# An unknown number, 'at least X', or 'at most X' are accepted resposes",
# Type="String",
# Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePreDetermined",
Label="Surveillance Activity Arthropod Source PreDetermined",
Definition="Answer to the question: 'Are the Arthropod Sources to be included
in the Surveillace Activity predetemined?' (the opposite option is to determine them
opportunistically during a Field Visit)",
Type="Single selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePreviousSurveillanceActivities",
Label="Surveillance Activity Arthropod Source in Previous Surveillance Activities",
Definition="Answer to the question: 'Have any of the Arthropod Sources of the Surveillance
Activity been included in previous Suveillance Activities",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePreviousProjectCodes",
Label="Surveillance Activity Arthropod Source Previous Project Codes",
Definition="The codes of previous Projects containing the Arthropod Sources included
in the current Surveillance Activity",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePreviousSurveillanceActivitiesCodes",
Label="Surveillance Activity Arthropod Source Previous Surveillance Activity Codes",
Definition="The codes of previous Surveillance Activities containing the Arthropod Sources included
in the current Surveillance Activity",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceList",
Label="Surveillance Activity Arthropod Source List",
Definition="A list with the names or codes of the Arthropod Source
included in the Surveillance Activity",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceHowDefined",
Label="Surveillance Activity Arthropod Source How Defined",
Definition="Description of the process to select the Arthropod Sources
included in the Surveillance Activity",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceIdentificationMethod",
Label="Surveillance Activity Arthropod Source Identification Method",
Definition="The methodology used to identify the Arthropod Sources included in
the Surveillance Activity",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceIdentificationMethodReferences",
Label="Surveillance Activity Arthropod Source Identification Method References",
Definition="References methodology used to identify the Arthropod Sources included in
Surveillance Activity",
Type="String",
Mandatory="No"),
data.frame(
Variable="SurveillanceActivityArthropodSourceInclusionCriteria",
Label="Surveillance Activity Arthropod Source Inclusion Criteria",
Definition="The specific criteria to include Arthropod Sources in the
Surveillance Activity, if any",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceExclusionCriteria",
Label="Surveillance Activity Arthropod Source Exclusion Criteria",
Definition="The specific criteria to exclude Arthropod Sources from the
Surveillance Activity, if any",
Type="String",
Mandatory="No"),
data.frame(
Variable="SurveillanceActivityArthropodSourceFollowedOverTime",
Label="Surveillance Activity Arthropod Source Followed Over Time",
Definition="Answer to the question: 'Are Arthropod Sources followed during the
Surveillance Activity and Source Records obtained over time?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceFollowedOverTimeFrequecy",
Label="Surveillance Activity Arthropod Source Followed Over Time Frequency",
Definition="Description of the frequency that Arthropod Source
will be examined",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourcePlannedVisitsPerSource",
Label="Surveillance Activity Arthropod Source Planned Visits Per Source",
Definition="The number of planned visits per Arthropod Source of the
Surveillance Activity. An unknown number, 'at least X', or 'at most X'
are accepted resposes",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceOtherAttributes",
Label="Surveillance Activity Arthropod Source Other Attributes",
Definition="Answer to the question: 'Does the Surveillance Activity involve tracking
other properties of Arthropod Sources not included in the the data model?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceListDefinitionOtherAtttributes",
Label="Surveillance Activity Arthropod Source Definition Other Attributes",
Definition="Description of other attributes of interest for the Arthropod Sources
not included in the the data model?'",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceSpatiaFileProvided",
Label="Surveillance Activity Arthropod Source Spatial File Provided",
Definition="Answer to the question: 'Has a file with the spatial data and other
relevant attributes of the Arthropod Sources in the Surveillance Activity
been provided?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceProjection",
Label="Surveillance Activity Arthropod Source Projection",
Definition="The projection of the spatial data of the Arthropod Sources in the file
provided",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityPreviousArthropodSource",
Label="Surveillance Activity Previous Arthropod Source",
Definition="Answer to the question: 'Are there Arthropod Sources included
in the current Surveillance Activities that have been included in previous Surveillance Activities?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityPreviousArthropodSourceProjectID",
Label="Surveillance Activity Previous Arthropod Source Project ID",
Definition="The code of the Projects under which Arthropod Sources
included in the current Surveillance Activity were previously included",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityPreviousArthropodSourceSurveillanceActivityID",
Label="Surveillance Activity Previous Arthropod Source SurveillanceActivity ID",
Definition="The code of the Surveillance Activites under which Arthropod Sources
included in the current Surveillance Activity were previously included",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityPreviousArthropodSourceInclusionCriteria",
Label="Surveillance Activity Previous Arthropod Source Inclusion Criteria",
Definition="The specific criteria for the inclusion of previous Arthropod Sources,
if any",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityPreviousArthropodSourceExclusionCriteria",
Label="Surveillance Activity Previous Arthropod Source Exclusion Criteria",
Definition="The specific criteria for the exclusion of previous Arthropod Sources,
if any",
Type="String",
Mandatory="No"),
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordInclusionCriteria",
# Label="Surveillance Activity New Arthropod Source Records Inclusion Criteria",
# Definition="The specific criteria for the inclusion of new Arthropod Source Records,
# if any",
# Type="String",
# Mandatory="Yes"),
#
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordExclusionCriteria",
# Label="Surveillance Activity New Arthropod Source Records Exclusion Criteria",
# Definition="The specific criteria for the exclusion of new Arthropod Source Records,
# if any",
# Type="String",
# Mandatory="No"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordCodeStructure",
Label="Surveillance Activity New Arthropod Source Record Code Structure",
Definition="Explain the nomenclature of new Arthropod Source Record Codes of the
Surveillance Activity (e.g., 'first letter refers to the pathogen, the next
two letters refer to the country, the next letter refers to the taxonomic group,
the number is the sequential number of the Arthropod Sourcein the
Surveillance Activity code, and the number is the sequential number of the
Arthropod SourceRecord')",
Type="String",
Mandatory="Yes"),
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordAbiotic",
# Label="Surveillance Activity New Arthropod Source Record Abiotic",
# Definition="Answer to the question: 'Do new Arthropod Source Records of
# the Surveillance Activity include abiotic tissue?'",
# Type="Boolean",
# Mandatory="Yes"),
#
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordAbioticTissueType",
# Label="Surveillance Activity New Arthropod Source Record Abiotic Tissue Type",
# Definition="The type of abiotic tissue of the new Arthropod Source Records of
# the Surveillance Activity",
# Type="Multiple selection",
# Mandatory="Yes"),
#
#
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordBiotic",
# Label="Surveillance Activity New Arthropod Source Record Biotic",
# Definition="Answer to the question: 'Do new Arthropod Source Records of
# the Surveillance Activity include Biotic tissue?'",
# Type="Boolean",
# Mandatory="Yes"),
#
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordBioticTissueType",
# Label="Surveillance Activity New Arthropod Source Record Biotic Tissue Type",
# Definition="The type of biotic tissue of the new Arthropod Source Records of
# the Surveillance Activity",
# Type="Multiple selection",
# Mandatory="Yes"),
#
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordBioticSpecies",
# Label="Surveillance Activity New Arthropod Source Record Biotic Species",
# Definition="Species sourcing the biotic tissue of the new Arthropod Sources
# Records of the Surveillance Activity. It is possible to select high taxonomy
# levels such as 'Mammalia', 'Chordata', 'Insecta', etc. to indicate that no
# particular species is targeted or when the species is unknown",
# Type="Multiple selection",
# Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordSpeciesIdentification",
Label="Surveillance Activity New Arthropod Source Record Species Identification",
Definition="Answer to the question: 'Are the Arthropod species in the new Arthropod Source Records
identified'?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordSpeciesIdentificationMethod",
Label="Surveillance Activity New Arthropod Source Record Species Identification Method",
Definition="The methodology used to identify the Arthropod species in the new Arthropod Source Records",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordSpeciesIdentificationMethodReferences",
Label="Surveillance Activity New Arthropod Source Record Species Identification Method References",
Definition="The references associated with the methodology used to identify the
Arthropod species in the new Arthropod Source Records",
Type="String",
Mandatory="No"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordCount",
Label="Surveillance Activity New Arthropod Source Record Count",
Definition="Answer to the question: 'Are the arthropods in the new Arthropod Source
Record counted'?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordCountbySpecies",
Label="Surveillance Activity New Arthropod Source Record Count By Species",
Definition="Answer to the question: 'Are the arthropods in the new Arthropod Source
Record counted by species'?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordCountMethod",
Label="Surveillance Activity New Arthropod Source Record Count Method",
Definition="The methodology used to count the Arthropods in the new Arthropod Source Records",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordCountExact",
Label="Surveillance Activity New Arthropod Source Record Count Exact",
Definition="Answer to the question: 'Is the count of the arthropods in the new Arthropod Source
Record exact (e.g., 1,678 mosquitoes)'?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordCountEstimated",
Label="Surveillance Activity New Arthropod Source Record Count Estimated",
Definition="Answer to the question: 'Is the count of the arthropods in the new Arthropod Source
Record estimated (e.g., between 500 - 1000)'?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordPresenceAbsence",
Label="Surveillance Activity New Arthropod Source Record Presence Absence",
Definition="Answer to the question: 'Are arthropod species in the new Source
Records reported as present'?",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordInclusionCriteria",
Label="Surveillance Activity New Arthropod Source Record Inclusion Criteria",
Definition="The specific criteria to include Arthropod Source Records in the
Surveillance Activity, if any",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordExclusionCriteria",
Label="Surveillance Activity New Arthropod Source Record Exclusion Criteria",
Definition="The specific criteria to exclude Arthropod Source Records from the
Surveillance Activity, if any",
Type="String",
Mandatory="No"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordFieldStorage",
Label="Surveillance Activity New Arthropod Source Records Field Storage",
Definition="Method to store the new Arthropod Source Records while
in the field under the current Surveillance Activity",
Type="Mutiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceRecordLaboratoryStorage",
Label="Surveillance Activity New Arthropod Source Records Laboratory Storage",
Definition="Method to store the new Arthropod Source Records collected
in the laboratory under the current Surveillance Activity",
Type="Mutiple selection",
Mandatory="Yes"),
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordsNumberPerSourceKnown",
# Label="Surveillance Activity Arthropod Source Event Number Per Location Known",
# Definition="Answer to the question: 'Is the total number of new Arthropod Source Records
# per Source where new Arthropod Source Records are obtained from during the Surveillance Activity?'",
# Type="Boolean",
# Mandatory="Yes"),
#
#
# data.frame(
# Variable="SurveillanceActivityNewArthropodSourceRecordsNumberPerSource",
# Label="Surveillance Activity New Arthropod Source Records Number Per Source",
# Definition="The total number of new Arthropod Source Records per Source where
# new Arthropod Source Records are obtained from during the Surveillance Activity.
# An unknown number, 'at least X', or 'at most X' are accepted resposes",
# Type="String",
# Mandatory="Yes"),
#
data.frame(
Variable="SurveillanceActivityArthropodStoredSpecimen",
Label="Surveillance Activity Stored Arthropod Source Specimens",
Definition="Answer to the question: 'Are stored Arthropod Sources Specimens
of previous Surveillance Activities included in the current Surveillance Activity?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodStoredSpecimenProjectOrigin",
Label="Surveillance Activity Stored Arthropod Source Specimens Project Origin",
Definition="The code of the Projects under which stored Arthropod Source Specimens
included in the current Surveillance Activity were originated",
Type="Multiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodStoredSpecimenSurveillanceActivity",
Label="Surveillance Activity Stored Arthropod Source Specimens Surveillance Activity Origin",
Definition="The code of the Surveillance Activities under which stored Arthropod Source Specimens
included in the current Surveillance Activity were originated",
Type="Multiple selection",
Mandatory="Yes"),
# data.frame(
# Variable="SurveillanceActivityPreviousArthropodNewSpecimens",
# Label="Surveillance Activity Previous Stored Arthropod Source New Specimens",
# Definition="Answer to the question: 'In the current Surveillance Activity,
# are new Specimens generated from previous stored Animal Sources (Carcasses)?'",
# Type="Boolean",
# Mandatory="Yes"),
#
data.frame(
Variable="SurveillanceActivityNewArthropodSpecimen",
Label="Surveillance Activity New Arthropod Source Specimens",
Definition="Answer to the question: 'In the current Surveillance Activity,
are new Specimens generated from Arthropod Sources?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSpecimenCodeStructure",
Label="Surveillance Activity New Arthropod Source Specimens Code Structure",
Definition="Explain the nomenclature of the new Arthropod Source Record Specimen Codes of the
Surveillance Activity (e.g., 'first letter refers to the pathogen, the next
two letters refer to the country, the next letter refers to the taxonomic group,
the number is the sequential number of the Arthropod Source in the
Surveillance Activity code, and the number is the sequential number of the
Arthropod Source Record and finally a sequential letter for the specimen')",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceSpecimenPerArthropodSourceRecordKnown",
Label="Surveillance Activity New Arthropod Source Specimens Per Record Known",
Definition="Answer to the question: 'Is the total number of new Arthropod Specimens
per Arthropod Source Record obtained during the Surveillance Activity known?'",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceSpecimenPerArthropodSourceRecord",
Label="Surveillance Activity New Arthropod Source Specimens Per Record",
Definition="The total number of Arthropod Specimens per Arthropod Source
Record obtained during the Surveillance Activity. An unknown number, 'at least X', or 'at most
X' are accepted resposes",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceSpecimenNumberArthropods",
Label="Surveillance Activity New Arthropod Source Specimens Number Arthropods",
Definition="The number of arthropods pero Arthropod Specimens created during
the Surveillance Activity. An unknown number, 'at least X', or 'at most X', and ranges
are accepted resposes. Describe teh number by arthropod species if necessary ",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceSpecimenCreationMethod",
Label="Surveillance Activity New Specimens Arthropod Source Creation Method ",
Definition="Description how new Arthropod Specimen are created from the
Arthropod Source Record",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceSpecimenCreationMethodReferences",
Label="Surveillance Activity New Specimens Arthropod Source Creation Method References",
Definition="The references associated with the method to generate new Arthropod
Specimens from Arthropod Source Records",
Type="String",
Mandatory="No"),
data.frame(
Variable="SurveillanceActivityArthropodSourceSpecimenInclusionCriteria",
Label="Surveillance Activity Arthropod Source Specimens Inclusion Criteria",
Definition="The specific criteria for the inclusion of Arthropod Source Specimens,
in the Surveillance Activity, if any",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceSpecimenExclusionCriteria",
Label="Surveillance Activity Arthropod Source Specimens Exclusion Criteria",
Definition="The specific criteria for the exclusion of Arthropod Source Specimens,
in the Surveillance Activity, if any",
Type="String",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceSpecimenFieldStorage",
Label="Surveillance Activity New Arthropod Source Specimens Field Storage",
Definition="Method to store the new Arthropod Source Specimens while
in the field under the current Surveillance Activity",
Type="Mutiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityNewArthropodSourceSpecimenLabStorage",
Label="Surveillance Activity New Arthropod Source Specimens Laboratory Storage",
Definition="Method to store the new Arthropod Source Specimens
in the laboratory under the current Surveillance Activity",
Type="Mutiple selection",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceSpecimenPooling",
Label="Surveillance Activity Arthropod Source Specimen Pooling",
Definition="Answer to the question: 'Are Arthropod Source Specimens
included in the current Surveillance Activity pooled?'
(for a definition of 'pooling' in the database see the online database manual)",
Type="Boolean",
Mandatory="Yes"),
data.frame(
Variable="SurveillanceActivityArthropodSourceSpecimenPoolingStrategy",
Label="Surveillance Activity Arthropod Source Specimen Pooling Strategy",