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Hi, This is more of a known problem of conflicts with LaTeX $ and julia interpolation $ when both of them appear in a markdown macro (see JuliaLang/julia#36946 for example and the other issues referenced within):
Using the alternative inline latex synthax with double backtick instead of $ solves the issue (though at the moment the equation number is put in a newline of its own, but that should be fixable)
Edit: It seems that if the $(eqref(...)) call is not the first element in a paragraph, the equation number is correctly put in the same line as the text:
for example$x+2$
md"""
$(eqref("eq1")) is with
"""
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