diff --git a/ctk-schemas/src/main/resources/avro/alleleAnnotations.avdl b/ctk-schemas/src/main/resources/avro/alleleAnnotations.avdl index 8c623304..798647c4 100644 --- a/ctk-schemas/src/main/resources/avro/alleleAnnotations.avdl +++ b/ctk-schemas/src/main/resources/avro/alleleAnnotations.avdl @@ -182,8 +182,8 @@ record VariantAnnotation { /** The ID of the variant annotation set this record belongs to. */ string variantAnnotationSetId; - /** The date this annotation was created in milliseconds from the epoch. */ - union { null, long } created = null; + /** The :ref:`ISO 8601 ` time at which this record was created. */ + union { null, string } created = null; /** The transcript effect annotation for the alleles of this variant. Each one diff --git a/ctk-schemas/src/main/resources/avro/metadata.avdl b/ctk-schemas/src/main/resources/avro/metadata.avdl index c10619b2..36f15618 100644 --- a/ctk-schemas/src/main/resources/avro/metadata.avdl +++ b/ctk-schemas/src/main/resources/avro/metadata.avdl @@ -58,20 +58,20 @@ record Experiment { /** The time at which this record was created. - Format: ISO 8601, YYYY-MM-DDTHH:MM:SS.SSS (e.g. 2015-02-10T00:03:42.123Z) + Format: :ref:`ISO 8601 ` */ - string recordCreateTime; + string created; /** The time at which this record was last updated. - Format: ISO 8601, YYYY-MM-DDTHH:MM:SS.SSS (e.g. 2015-02-10T00:03:42.123Z) + Format: :ref:`ISO 8601 ` */ - string recordUpdateTime; + string updated; /** The time at which this experiment was performed. Granularity here is variable (e.g. date only). - Format: ISO 8601, YYYY-MM-DDTHH:MM:SS (e.g. 2015-02-10T00:03:42) + Format: :ref:`ISO 8601 ` */ union { null, string } runTime = null; @@ -168,15 +168,15 @@ record Analysis { /** The time at which this record was created. - Format: ISO 8601, YYYY-MM-DDTHH:MM:SS.SSS (e.g. 2015-02-10T00:03:42.123Z) + Format: :ref:`ISO 8601 ` */ - union { null, string } recordCreateTime = null; + union { null, string } created = null; /** The time at which this record was last updated. - Format: ISO 8601, YYYY-MM-DDTHH:MM:SS.SSS (e.g. 2015-02-10T00:03:42.123Z) + Format: :ref:`ISO 8601 ` */ - string recordUpdateTime; + string updated; /** The type of analysis. */ union { null, string } type = null; diff --git a/ctk-schemas/src/main/resources/avro/metadatamethods.avdl b/ctk-schemas/src/main/resources/avro/metadatamethods.avdl new file mode 100644 index 00000000..1d4bee36 --- /dev/null +++ b/ctk-schemas/src/main/resources/avro/metadatamethods.avdl @@ -0,0 +1,70 @@ +@namespace("org.ga4gh.methods") + +protocol MetadataMethods { + +import idl "metadata.avdl"; +import idl "common.avdl"; +import idl "methods.avdl"; + +/****************** /datasets/search *********************/ +/** +This request maps to the body of `POST /datasets/search` as JSON. +*/ +record SearchDatasetsRequest { + + /** + Specifies the maximum number of results to return in a single page. + If unspecified, a system default will be used. + */ + union { null, int } pageSize = null; + + /** + The continuation token, which is used to page through large result sets. + To get the next page of results, set this parameter to the value of + `nextPageToken` from the previous response. + */ + union { null, string } pageToken = null; +} + +/** +This is the response from `POST /datasets/search` expressed as JSON. +*/ +record SearchDatasetsResponse { + /** The list of datasets. */ + array datasets = []; + + /** + The continuation token, which is used to page through large result sets. + Provide this value in a subsequent request to return the next page of + results. This field will be empty if there aren't any additional results. + */ + union { null, string } nextPageToken = null; +} + +/** +Gets a list of datasets accessible through the API. + +TODO: Reads and variants both want to have datasets. Are they the same object? + +`POST /datasets/search` must accept a JSON version of +`SearchDatasetsRequest` as the post body and will return a JSON version +of `SearchDatasetsResponse`. +*/ +SearchDatasetsResponse searchDatasets( + /** + This request maps to the body of `POST /datasets/search` as JSON. + */ + SearchDatasetsRequest request) throws GAException; + +/**************** /datasets/{id} *******************/ +/** +Gets a `Dataset` by ID. +`GET /datasets/{id}` will return a JSON version of `Dataset`. +*/ +org.ga4gh.models.Dataset getDataset( + /** + The ID of the `Dataset`. + */ + string id) throws GAException; + +} \ No newline at end of file diff --git a/cts-java/src/test/java/org/ga4gh/cts/api/TestData.java b/cts-java/src/test/java/org/ga4gh/cts/api/TestData.java index 47549e80..3de6d9f8 100644 --- a/cts-java/src/test/java/org/ga4gh/cts/api/TestData.java +++ b/cts-java/src/test/java/org/ga4gh/cts/api/TestData.java @@ -62,7 +62,7 @@ private TestData() { * The names of the variant annotation sets used for variant annotation in the standard test data. */ public static final List VARIANT_ANNOTATION_SET_NAMES = - Arrays.asList("WASH7P_annotation", "OR4F_annotation"); + Arrays.asList("WASH7P", "OR4F"); /** * The names of known-good read groups. diff --git a/cts-java/src/test/java/org/ga4gh/cts/api/variantAnnotation/VariantAnnotationSetsSearchIT.java b/cts-java/src/test/java/org/ga4gh/cts/api/variantAnnotation/VariantAnnotationSetsSearchIT.java index 248f715d..e59ef322 100644 --- a/cts-java/src/test/java/org/ga4gh/cts/api/variantAnnotation/VariantAnnotationSetsSearchIT.java +++ b/cts-java/src/test/java/org/ga4gh/cts/api/variantAnnotation/VariantAnnotationSetsSearchIT.java @@ -2,25 +2,20 @@ import org.apache.avro.AvroRemoteException; import org.ga4gh.ctk.CtkLogs; -import org.ga4gh.ctk.transport.GAWrapperException; import org.ga4gh.ctk.transport.URLMAPPING; import org.ga4gh.ctk.transport.protocols.Client; -import org.ga4gh.cts.api.TestData; import org.ga4gh.cts.api.Utils; import org.ga4gh.methods.*; -import org.ga4gh.models.VariantSet; import org.ga4gh.models.VariantAnnotationSet; -import org.ga4gh.models.AnalysisResult; -import org.ga4gh.models.Analysis; -import org.ga4gh.models.OntologyTerm; import org.junit.Test; import org.junit.experimental.categories.Category; -import java.net.HttpURLConnection; +import java.text.DateFormat; +import java.text.ParseException; +import java.text.SimpleDateFormat; import java.util.List; import static org.assertj.core.api.Assertions.*; -import static org.ga4gh.cts.api.Utils.catchGAWrapperException; /** * Tests dealing with searching for VariantAnnotationSets. @@ -80,7 +75,7 @@ public void checkGetVariantAnnotationSetById() throws AvroRemoteException { *@throws AvroRemoteException if there's a communication problem or server exception ({@link GAException}) */ @Test - public void checkVariantAnnotationAnalysis() throws AvroRemoteException { + public void checkVariantAnnotationAnalysis() throws AvroRemoteException, ParseException { // Seek a list of VariantAnnotationSets for the compliance dataset. final List variantAnnotationSets = Utils.getAllVariantAnnotationSets(client); @@ -91,12 +86,17 @@ public void checkVariantAnnotationAnalysis() throws AvroRemoteException { // Check the Analysis record within the VariantAnnotationSet matches the test data final String name = "compliance1"; final String description = "variant annotation test data"; - final String created = "2015-11-18T00:00:00.000000Z"; + final String created = "2015-11-18"; + // TODO make a more robust ISO8601 parser + // Date formatting can be ISO compliant but still break these + // However, the second, df2 matches python's datetime.isoformat function + DateFormat df1 = new SimpleDateFormat("yyyy-MM-dd"); + DateFormat df2 = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss'Z'"); final String software = "SnpEff"; assertThat(vSet.getAnalysis().getName()).isEqualTo(name); assertThat(vSet.getAnalysis().getDescription()).isEqualTo(description); - assertThat(vSet.getAnalysis().getRecordCreateTime()).isEqualTo(created); + assertThat(df2.parse(vSet.getAnalysis().getCreated())).isEqualTo(df1.parse(created)); assertThat(vSet.getAnalysis().getSoftware().get(0)).isEqualTo(software); } diff --git a/cts-java/src/test/java/org/ga4gh/cts/api/variants/VariantSetsSearchIT.java b/cts-java/src/test/java/org/ga4gh/cts/api/variants/VariantSetsSearchIT.java index 8fc98a63..b205fa98 100644 --- a/cts-java/src/test/java/org/ga4gh/cts/api/variants/VariantSetsSearchIT.java +++ b/cts-java/src/test/java/org/ga4gh/cts/api/variants/VariantSetsSearchIT.java @@ -52,7 +52,7 @@ public void checkSearchingVariantSetsReturnsSome() throws AvroRemoteException { */ @Test public void checkExpectedVariantSets() throws AvroRemoteException { - final int expectedNumberOfVariantSets = 2; + final int expectedNumberOfVariantSets = 3; final SearchVariantSetsRequest req = SearchVariantSetsRequest.newBuilder() diff --git a/test-data/OR4F_annotation.vcf b/test-data/brca1_OR4F_annotation.vcf similarity index 100% rename from test-data/OR4F_annotation.vcf rename to test-data/brca1_OR4F_annotation.vcf diff --git a/test-data/WASH7P_annotation.vcf b/test-data/brca1_WASH7P_annotation.vcf similarity index 100% rename from test-data/WASH7P_annotation.vcf rename to test-data/brca1_WASH7P_annotation.vcf diff --git a/test-data/sequence_ontology.txt b/test-data/sequence_ontology.txt new file mode 100644 index 00000000..f40f2b9f --- /dev/null +++ b/test-data/sequence_ontology.txt @@ -0,0 +1,2284 @@ +SO:0000000 Sequence_Ontology +SO:0000001 region +SO:0000002 sequence_secondary_structure +SO:0000003 G_quartet +SO:0000004 interior_coding_exon +SO:0000005 satellite_DNA +SO:0000006 PCR_product +SO:0000007 read_pair +SO:0000008 gene_sensu_your_favorite_organism +SO:0000009 gene_class +SO:0000010 protein_coding +SO:0000011 non_protein_coding +SO:0000012 scRNA_primary_transcript +SO:0000013 scRNA +SO:0000014 INR_motif +SO:0000015 DPE_motif +SO:0000016 BREu_motif +SO:0000017 PSE_motif +SO:0000018 linkage_group +SO:0000020 RNA_internal_loop +SO:0000021 asymmetric_RNA_internal_loop +SO:0000022 A_minor_RNA_motif +SO:0000023 K_turn_RNA_motif +SO:0000024 sarcin_like_RNA_motif +SO:0000025 symmetric_RNA_internal_loop +SO:0000026 RNA_junction_loop +SO:0000027 RNA_hook_turn +SO:0000028 base_pair +SO:0000029 WC_base_pair +SO:0000030 sugar_edge_base_pair +SO:0000031 aptamer +SO:0000032 DNA_aptamer +SO:0000033 RNA_aptamer +SO:0000034 morpholino_oligo +SO:0000035 riboswitch +SO:0000036 matrix_attachment_site +SO:0000037 locus_control_region +SO:0000038 match_set +SO:0000039 match_part +SO:0000040 genomic_clone +SO:0000041 sequence_operation +SO:0000042 pseudogene_attribute +SO:0000043 processed_pseudogene +SO:0000044 pseudogene_by_unequal_crossing_over +SO:0000045 delete +SO:0000046 insert +SO:0000047 invert +SO:0000048 substitute +SO:0000049 translocate +SO:0000050 gene_part +SO:0000051 probe +SO:0000052 assortment_derived_deficiency +SO:0000053 sequence_variant_affecting_regulatory_region +SO:0000054 aneuploid +SO:0000055 hyperploid +SO:0000056 hypoploid +SO:0000057 operator +SO:0000058 assortment_derived_aneuploid +SO:0000059 nuclease_binding_site +SO:0000060 compound_chromosome_arm +SO:0000061 restriction_enzyme_binding_site +SO:0000062 deficient_intrachromosomal_transposition +SO:0000063 deficient_interchromosomal_transposition +SO:0000064 gene_by_transcript_attribute +SO:0000065 free_chromosome_arm +SO:0000066 gene_by_polyadenylation_attribute +SO:0000067 gene_to_gene_feature +SO:0000068 overlapping +SO:0000069 inside_intron +SO:0000070 inside_intron_antiparallel +SO:0000071 inside_intron_parallel +SO:0000072 end_overlapping_gene +SO:0000073 five_prime_three_prime_overlap +SO:0000074 five_prime_five_prime_overlap +SO:0000075 three_prime_three_prime_overlap +SO:0000076 three_prime_five_prime_overlap +SO:0000077 antisense +SO:0000078 polycistronic_transcript +SO:0000079 dicistronic_transcript +SO:0000080 operon_member +SO:0000081 gene_array_member +SO:0000082 processed_transcript_attribute +SO:0000083 macronuclear_sequence +SO:0000084 micronuclear_sequence +SO:0000085 gene_by_genome_location +SO:0000086 gene_by_organelle_of_genome +SO:0000087 nuclear_gene +SO:0000088 mt_gene +SO:0000089 kinetoplast_gene +SO:0000090 plastid_gene +SO:0000091 apicoplast_gene +SO:0000092 ct_gene +SO:0000093 chromoplast_gene +SO:0000094 cyanelle_gene +SO:0000095 leucoplast_gene +SO:0000096 proplastid_gene +SO:0000097 nucleomorph_gene +SO:0000098 plasmid_gene +SO:0000099 proviral_gene +SO:0000100 endogenous_retroviral_gene +SO:0000101 transposable_element +SO:0000102 expressed_sequence_match +SO:0000103 clone_insert_end +SO:0000104 polypeptide +SO:0000105 chromosome_arm +SO:0000106 non_capped_primary_transcript +SO:0000107 sequencing_primer +SO:0000108 mRNA_with_frameshift +SO:0000109 sequence_variant_obs +SO:0000110 sequence_feature +SO:0000111 transposable_element_gene +SO:0000112 primer +SO:0000113 proviral_region +SO:0000114 methylated_cytosine +SO:0000115 transcript_feature +SO:0000116 edited +SO:0000117 transcript_with_readthrough_stop_codon +SO:0000118 transcript_with_translational_frameshift +SO:0000119 regulated +SO:0000120 protein_coding_primary_transcript +SO:0000121 forward_primer +SO:0000122 RNA_sequence_secondary_structure +SO:0000123 transcriptionally_regulated +SO:0000124 transcriptionally_constitutive +SO:0000125 transcriptionally_induced +SO:0000126 transcriptionally_repressed +SO:0000127 silenced_gene +SO:0000128 gene_silenced_by_DNA_modification +SO:0000129 gene_silenced_by_DNA_methylation +SO:0000130 post_translationally_regulated +SO:0000131 translationally_regulated +SO:0000132 reverse_primer +SO:0000133 epigenetically_modified +SO:0000134 genomically_imprinted +SO:0000135 maternally_imprinted +SO:0000136 paternally_imprinted +SO:0000137 allelically_excluded +SO:0000138 gene_rearranged_at_DNA_level +SO:0000139 ribosome_entry_site +SO:0000140 attenuator +SO:0000141 terminator +SO:0000142 DNA_sequence_secondary_structure +SO:0000143 assembly_component +SO:0000144 primary_transcript_attribute +SO:0000145 recoded_codon +SO:0000146 capped +SO:0000147 exon +SO:0000148 supercontig +SO:0000149 contig +SO:0000150 read +SO:0000151 clone +SO:0000152 YAC +SO:0000153 BAC +SO:0000154 PAC +SO:0000155 plasmid +SO:0000156 cosmid +SO:0000157 phagemid +SO:0000158 fosmid +SO:0000159 deletion +SO:0000160 lambda_clone +SO:0000161 methylated_adenine +SO:0000162 splice_site +SO:0000163 five_prime_cis_splice_site +SO:0000164 three_prime_cis_splice_site +SO:0000165 enhancer +SO:0000166 enhancer_bound_by_factor +SO:0000167 promoter +SO:0000168 restriction_enzyme_cut_site +SO:0000169 RNApol_I_promoter +SO:0000170 RNApol_II_promoter +SO:0000171 RNApol_III_promoter +SO:0000172 CAAT_signal +SO:0000173 GC_rich_promoter_region +SO:0000174 TATA_box +SO:0000175 minus_10_signal +SO:0000176 minus_35_signal +SO:0000177 cross_genome_match +SO:0000178 operon +SO:0000179 clone_insert_start +SO:0000180 retrotransposon +SO:0000181 translated_nucleotide_match +SO:0000182 DNA_transposon +SO:0000183 non_transcribed_region +SO:0000184 U2_intron +SO:0000185 primary_transcript +SO:0000186 LTR_retrotransposon +SO:0000187 repeat_family +SO:0000188 intron +SO:0000189 non_LTR_retrotransposon +SO:0000190 five_prime_intron +SO:0000191 interior_intron +SO:0000192 three_prime_intron +SO:0000193 RFLP_fragment +SO:0000194 LINE_element +SO:0000195 coding_exon +SO:0000196 five_prime_coding_exon_coding_region +SO:0000197 three_prime_coding_exon_coding_region +SO:0000198 noncoding_exon +SO:0000199 translocation +SO:0000200 five_prime_coding_exon +SO:0000201 interior_exon +SO:0000202 three_prime_coding_exon +SO:0000203 UTR +SO:0000204 five_prime_UTR +SO:0000205 three_prime_UTR +SO:0000206 SINE_element +SO:0000207 simple_sequence_length_variation +SO:0000208 terminal_inverted_repeat_element +SO:0000209 rRNA_primary_transcript +SO:0000210 tRNA_primary_transcript +SO:0000211 alanine_tRNA_primary_transcript +SO:0000212 arginine_tRNA_primary_transcript +SO:0000213 asparagine_tRNA_primary_transcript +SO:0000214 aspartic_acid_tRNA_primary_transcript +SO:0000215 cysteine_tRNA_primary_transcript +SO:0000216 glutamic_acid_tRNA_primary_transcript +SO:0000217 glutamine_tRNA_primary_transcript +SO:0000218 glycine_tRNA_primary_transcript +SO:0000219 histidine_tRNA_primary_transcript +SO:0000220 isoleucine_tRNA_primary_transcript +SO:0000221 leucine_tRNA_primary_transcript +SO:0000222 lysine_tRNA_primary_transcript +SO:0000223 methionine_tRNA_primary_transcript +SO:0000224 phenylalanine_tRNA_primary_transcript +SO:0000225 proline_tRNA_primary_transcript +SO:0000226 serine_tRNA_primary_transcript +SO:0000227 threonine_tRNA_primary_transcript +SO:0000228 tryptophan_tRNA_primary_transcript +SO:0000229 tyrosine_tRNA_primary_transcript +SO:0000230 valine_tRNA_primary_transcript +SO:0000231 snRNA_primary_transcript +SO:0000232 snoRNA_primary_transcript +SO:0000233 mature_transcript +SO:0000234 mRNA +SO:0000235 TF_binding_site +SO:0000236 ORF +SO:0000237 transcript_attribute +SO:0000238 foldback_element +SO:0000239 flanking_region +SO:0000240 chromosome_variation +SO:0000241 internal_UTR +SO:0000242 untranslated_region_polycistronic_mRNA +SO:0000243 internal_ribosome_entry_site +SO:0000244 four_cutter_restriction_site +SO:0000245 mRNA_by_polyadenylation_status +SO:0000246 polyadenylated +SO:0000247 mRNA_not_polyadenylated +SO:0000248 sequence_length_variation +SO:0000249 six_cutter_restriction_site +SO:0000250 modified_RNA_base_feature +SO:0000251 eight_cutter_restriction_site +SO:0000252 rRNA +SO:0000253 tRNA +SO:0000254 alanyl_tRNA +SO:0000255 rRNA_small_subunit_primary_transcript +SO:0000256 asparaginyl_tRNA +SO:0000257 aspartyl_tRNA +SO:0000258 cysteinyl_tRNA +SO:0000259 glutaminyl_tRNA +SO:0000260 glutamyl_tRNA +SO:0000261 glycyl_tRNA +SO:0000262 histidyl_tRNA +SO:0000263 isoleucyl_tRNA +SO:0000264 leucyl_tRNA +SO:0000265 lysyl_tRNA +SO:0000266 methionyl_tRNA +SO:0000267 phenylalanyl_tRNA +SO:0000268 prolyl_tRNA +SO:0000269 seryl_tRNA +SO:0000270 threonyl_tRNA +SO:0000271 tryptophanyl_tRNA +SO:0000272 tyrosyl_tRNA +SO:0000273 valyl_tRNA +SO:0000274 snRNA +SO:0000275 snoRNA +SO:0000276 miRNA +SO:0000277 bound_by_factor +SO:0000278 transcript_bound_by_nucleic_acid +SO:0000279 transcript_bound_by_protein +SO:0000280 engineered_gene +SO:0000281 engineered_foreign_gene +SO:0000282 mRNA_with_minus_1_frameshift +SO:0000283 engineered_foreign_transposable_element_gene +SO:0000284 type_I_enzyme_restriction_site +SO:0000285 foreign_gene +SO:0000286 long_terminal_repeat +SO:0000287 fusion_gene +SO:0000288 engineered_fusion_gene +SO:0000289 microsatellite +SO:0000290 dinucleotide_repeat_microsatellite_feature +SO:0000291 trinucleotide_repeat_microsatellite_feature +SO:0000292 repetitive_element +SO:0000293 engineered_foreign_repetitive_element +SO:0000294 inverted_repeat +SO:0000295 U12_intron +SO:0000296 origin_of_replication +SO:0000297 D_loop +SO:0000298 recombination_feature +SO:0000299 specific_recombination_site +SO:0000300 recombination_feature_of_rearranged_gene +SO:0000301 vertebrate_immune_system_gene_recombination_feature +SO:0000302 J_gene_recombination_feature +SO:0000303 clip +SO:0000304 type_II_enzyme_restriction_site +SO:0000305 modified_DNA_base +SO:0000306 methylated_DNA_base_feature +SO:0000307 CpG_island +SO:0000308 sequence_feature_locating_method +SO:0000309 computed_feature +SO:0000310 predicted_ab_initio_computation +SO:0000311 computed_feature_by_similarity +SO:0000312 experimentally_determined +SO:0000313 stem_loop +SO:0000314 direct_repeat +SO:0000315 TSS +SO:0000316 CDS +SO:0000317 cDNA_clone +SO:0000318 start_codon +SO:0000319 stop_codon +SO:0000320 intronic_splice_enhancer +SO:0000321 mRNA_with_plus_1_frameshift +SO:0000322 nuclease_hypersensitive_site +SO:0000323 coding_start +SO:0000324 tag +SO:0000325 rRNA_large_subunit_primary_transcript +SO:0000326 SAGE_tag +SO:0000327 coding_end +SO:0000328 microarray_oligo +SO:0000329 mRNA_with_plus_2_frameshift +SO:0000330 conserved_region +SO:0000331 STS +SO:0000332 coding_conserved_region +SO:0000333 exon_junction +SO:0000334 nc_conserved_region +SO:0000335 mRNA_with_minus_2_frameshift +SO:0000336 pseudogene +SO:0000337 RNAi_reagent +SO:0000338 MITE +SO:0000339 recombination_hotspot +SO:0000340 chromosome +SO:0000341 chromosome_band +SO:0000342 site_specific_recombination_target_region +SO:0000343 match +SO:0000344 splice_enhancer +SO:0000345 EST +SO:0000346 loxP_site +SO:0000347 nucleotide_match +SO:0000348 nucleic_acid +SO:0000349 protein_match +SO:0000350 FRT_site +SO:0000351 synthetic_sequence +SO:0000352 DNA +SO:0000353 sequence_assembly +SO:0000354 group_1_intron_homing_endonuclease_target_region +SO:0000355 haplotype_block +SO:0000356 RNA +SO:0000357 flanked +SO:0000359 floxed +SO:0000360 codon +SO:0000361 FRT_flanked +SO:0000362 invalidated_by_chimeric_cDNA +SO:0000363 floxed_gene +SO:0000364 transposable_element_flanking_region +SO:0000365 integron +SO:0000366 insertion_site +SO:0000367 attI_site +SO:0000368 transposable_element_insertion_site +SO:0000369 integrase_coding_region +SO:0000370 small_regulatory_ncRNA +SO:0000371 conjugative_transposon +SO:0000372 enzymatic_RNA +SO:0000373 recombinationally_inverted_gene +SO:0000374 ribozyme +SO:0000375 rRNA_5_8S +SO:0000376 RNA_6S +SO:0000377 CsrB_RsmB_RNA +SO:0000378 DsrA_RNA +SO:0000379 GcvB_RNA +SO:0000380 hammerhead_ribozyme +SO:0000381 group_IIA_intron +SO:0000382 group_IIB_intron +SO:0000383 MicF_RNA +SO:0000384 OxyS_RNA +SO:0000385 RNase_MRP_RNA +SO:0000386 RNase_P_RNA +SO:0000387 RprA_RNA +SO:0000388 RRE_RNA +SO:0000389 spot_42_RNA +SO:0000390 telomerase_RNA +SO:0000391 U1_snRNA +SO:0000392 U2_snRNA +SO:0000393 U4_snRNA +SO:0000394 U4atac_snRNA +SO:0000395 U5_snRNA +SO:0000396 U6_snRNA +SO:0000397 U6atac_snRNA +SO:0000398 U11_snRNA +SO:0000399 U12_snRNA +SO:0000400 sequence_attribute +SO:0000401 gene_attribute +SO:0000402 enhancer_attribute +SO:0000403 U14_snoRNA +SO:0000404 vault_RNA +SO:0000405 Y_RNA +SO:0000406 twintron +SO:0000407 rRNA_18S +SO:0000408 site +SO:0000409 binding_site +SO:0000410 protein_binding_site +SO:0000411 rescue_region +SO:0000412 restriction_fragment +SO:0000413 sequence_difference +SO:0000414 invalidated_by_genomic_contamination +SO:0000415 invalidated_by_genomic_polyA_primed_cDNA +SO:0000416 invalidated_by_partial_processing +SO:0000417 polypeptide_domain +SO:0000418 signal_peptide +SO:0000419 mature_protein_region +SO:0000420 five_prime_terminal_inverted_repeat +SO:0000421 three_prime_terminal_inverted_repeat +SO:0000422 U5_LTR_region +SO:0000423 R_LTR_region +SO:0000424 U3_LTR_region +SO:0000425 five_prime_LTR +SO:0000426 three_prime_LTR +SO:0000427 R_five_prime_LTR_region +SO:0000428 U5_five_prime_LTR_region +SO:0000429 U3_five_prime_LTR_region +SO:0000430 R_three_prime_LTR_region +SO:0000431 U3_three_prime_LTR_region +SO:0000432 U5_three_prime_LTR_region +SO:0000433 non_LTR_retrotransposon_polymeric_tract +SO:0000434 target_site_duplication +SO:0000435 RR_tract +SO:0000436 ARS +SO:0000437 assortment_derived_duplication +SO:0000438 gene_not_polyadenylated +SO:0000439 inverted_ring_chromosome +SO:0000440 vector_replicon +SO:0000441 ss_oligo +SO:0000442 ds_oligo +SO:0000443 polymer_attribute +SO:0000444 three_prime_noncoding_exon +SO:0000445 five_prime_noncoding_exon +SO:0000446 UTR_intron +SO:0000447 five_prime_UTR_intron +SO:0000448 three_prime_UTR_intron +SO:0000449 random_sequence +SO:0000450 interband +SO:0000451 gene_with_polyadenylated_mRNA +SO:0000452 transgene_attribute +SO:0000453 chromosomal_transposition +SO:0000454 rasiRNA +SO:0000455 gene_with_mRNA_with_frameshift +SO:0000456 recombinationally_rearranged_gene +SO:0000457 interchromosomal_duplication +SO:0000458 D_gene_segment +SO:0000459 gene_with_trans_spliced_transcript +SO:0000460 vertebrate_immunoglobulin_T_cell_receptor_segment +SO:0000461 inversion_derived_bipartite_deficiency +SO:0000462 pseudogenic_region +SO:0000463 encodes_alternately_spliced_transcripts +SO:0000464 decayed_exon +SO:0000465 inversion_derived_deficiency_plus_duplication +SO:0000466 V_gene_segment +SO:0000467 post_translationally_regulated_by_protein_stability +SO:0000468 golden_path_fragment +SO:0000469 post_translationally_regulated_by_protein_modification +SO:0000470 J_gene_segment +SO:0000471 autoregulated +SO:0000472 tiling_path +SO:0000473 negatively_autoregulated +SO:0000474 tiling_path_fragment +SO:0000475 positively_autoregulated +SO:0000476 contig_read +SO:0000477 polycistronic_gene +SO:0000478 C_gene_segment +SO:0000479 trans_spliced_transcript +SO:0000480 tiling_path_clone +SO:0000481 terminal_inverted_repeat +SO:0000482 vertebrate_immunoglobulin_T_cell_receptor_gene_cluster +SO:0000483 nc_primary_transcript +SO:0000484 three_prime_coding_exon_noncoding_region +SO:0000485 DJ_J_cluster +SO:0000486 five_prime_coding_exon_noncoding_region +SO:0000487 VDJ_J_C_cluster +SO:0000488 VDJ_J_cluster +SO:0000489 VJ_C_cluster +SO:0000490 VJ_J_C_cluster +SO:0000491 VJ_J_cluster +SO:0000492 D_gene_recombination_feature +SO:0000493 three_prime_D_heptamer +SO:0000494 three_prime_D_nonamer +SO:0000495 three_prime_D_spacer +SO:0000496 five_prime_D_heptamer +SO:0000497 five_prime_D_nonamer +SO:0000498 five_prime_D_spacer +SO:0000499 virtual_sequence +SO:0000500 Hoogsteen_base_pair +SO:0000501 reverse_Hoogsteen_base_pair +SO:0000502 transcribed_region +SO:0000503 alternately_spliced_gene_encodeing_one_transcript +SO:0000504 D_DJ_C_cluster +SO:0000505 D_DJ_cluster +SO:0000506 D_DJ_J_C_cluster +SO:0000507 pseudogenic_exon +SO:0000508 D_DJ_J_cluster +SO:0000509 D_J_C_cluster +SO:0000510 VD_gene_segment +SO:0000511 J_C_cluster +SO:0000512 inversion_derived_deficiency_plus_aneuploid +SO:0000513 J_cluster +SO:0000514 J_nonamer +SO:0000515 J_heptamer +SO:0000516 pseudogenic_transcript +SO:0000517 J_spacer +SO:0000518 V_DJ_cluster +SO:0000519 V_DJ_J_cluster +SO:0000520 V_VDJ_C_cluster +SO:0000521 V_VDJ_cluster +SO:0000522 V_VDJ_J_cluster +SO:0000523 V_VJ_C_cluster +SO:0000524 V_VJ_cluster +SO:0000525 V_VJ_J_cluster +SO:0000526 V_cluster +SO:0000527 V_D_DJ_C_cluster +SO:0000528 V_D_DJ_cluster +SO:0000529 V_D_DJ_J_C_cluster +SO:0000530 V_D_DJ_J_cluster +SO:0000531 V_D_J_C_cluster +SO:0000532 V_D_J_cluster +SO:0000533 V_heptamer +SO:0000534 V_J_cluster +SO:0000535 V_J_C_cluster +SO:0000536 V_nonamer +SO:0000537 V_spacer +SO:0000538 V_gene_recombination_feature +SO:0000539 DJ_C_cluster +SO:0000540 DJ_J_C_cluster +SO:0000541 VDJ_C_cluster +SO:0000542 V_DJ_C_cluster +SO:0000543 alternately_spliced_gene_encoding_greater_than_one_transcript +SO:0000544 helitron +SO:0000545 recoding_pseudoknot +SO:0000546 designed_sequence +SO:0000547 inversion_derived_bipartite_duplication +SO:0000548 gene_with_edited_transcript +SO:0000549 inversion_derived_duplication_plus_aneuploid +SO:0000550 aneuploid_chromosome +SO:0000551 polyA_signal_sequence +SO:0000552 Shine_Dalgarno_sequence +SO:0000553 polyA_site +SO:0000554 assortment_derived_deficiency_plus_duplication +SO:0000555 five_prime_clip +SO:0000556 five_prime_D_recombination_signal_sequence +SO:0000557 three_prime_clip +SO:0000558 C_cluster +SO:0000559 D_cluster +SO:0000560 D_J_cluster +SO:0000561 heptamer_of_recombination_feature_of_vertebrate_immune_system_gene +SO:0000562 nonamer_of_recombination_feature_of_vertebrate_immune_system_gene +SO:0000563 vertebrate_immune_system_gene_recombination_spacer +SO:0000564 V_DJ_J_C_cluster +SO:0000565 V_VDJ_J_C_cluster +SO:0000566 V_VJ_J_C_cluster +SO:0000567 inversion_derived_aneuploid_chromosome +SO:0000568 bidirectional_promoter +SO:0000569 retrotransposed +SO:0000570 three_prime_D_recombination_signal_sequence +SO:0000571 miRNA_encoding +SO:0000572 DJ_gene_segment +SO:0000573 rRNA_encoding +SO:0000574 VDJ_gene_segment +SO:0000575 scRNA_encoding +SO:0000576 VJ_gene_segment +SO:0000577 centromere +SO:0000578 snoRNA_encoding +SO:0000579 edited_transcript_feature +SO:0000580 methylation_guide_snoRNA_primary_transcript +SO:0000581 cap +SO:0000582 rRNA_cleavage_snoRNA_primary_transcript +SO:0000583 pre_edited_region +SO:0000584 tmRNA +SO:0000585 C_D_box_snoRNA_encoding +SO:0000586 tmRNA_primary_transcript +SO:0000587 group_I_intron +SO:0000588 autocatalytically_spliced_intron +SO:0000589 SRP_RNA_primary_transcript +SO:0000590 SRP_RNA +SO:0000591 pseudoknot +SO:0000592 H_pseudoknot +SO:0000593 C_D_box_snoRNA +SO:0000594 H_ACA_box_snoRNA +SO:0000595 C_D_box_snoRNA_primary_transcript +SO:0000596 H_ACA_box_snoRNA_primary_transcript +SO:0000597 transcript_edited_by_U_insertion/deletion +SO:0000598 edited_by_C_insertion_and_dinucleotide_insertion +SO:0000599 edited_by_C_to_U_substitution +SO:0000600 edited_by_A_to_I_substitution +SO:0000601 edited_by_G_addition +SO:0000602 guide_RNA +SO:0000603 group_II_intron +SO:0000604 editing_block +SO:0000605 intergenic_region +SO:0000606 editing_domain +SO:0000607 unedited_region +SO:0000608 H_ACA_box_snoRNA_encoding +SO:0000609 oligo_U_tail +SO:0000610 polyA_sequence +SO:0000611 branch_site +SO:0000612 polypyrimidine_tract +SO:0000613 bacterial_RNApol_promoter +SO:0000614 bacterial_terminator +SO:0000615 terminator_of_type_2_RNApol_III_promoter +SO:0000616 transcription_end_site +SO:0000617 RNApol_III_promoter_type_1 +SO:0000618 RNApol_III_promoter_type_2 +SO:0000619 A_box +SO:0000620 B_box +SO:0000621 RNApol_III_promoter_type_3 +SO:0000622 C_box +SO:0000623 snRNA_encoding +SO:0000624 telomere +SO:0000625 silencer +SO:0000626 chromosomal_regulatory_element +SO:0000627 insulator +SO:0000628 chromosomal_structural_element +SO:0000629 five_prime_open_reading_frame +SO:0000630 upstream_AUG_codon +SO:0000631 polycistronic_primary_transcript +SO:0000632 monocistronic_primary_transcript +SO:0000633 monocistronic_mRNA +SO:0000634 polycistronic_mRNA +SO:0000635 mini_exon_donor_RNA +SO:0000636 spliced_leader_RNA +SO:0000637 engineered_plasmid +SO:0000638 transcribed_spacer_region +SO:0000639 internal_transcribed_spacer_region +SO:0000640 external_transcribed_spacer_region +SO:0000641 tetranucleotide_repeat_microsatellite_feature +SO:0000642 SRP_RNA_encoding +SO:0000643 minisatellite +SO:0000644 antisense_RNA +SO:0000645 antisense_primary_transcript +SO:0000646 siRNA +SO:0000647 miRNA_primary_transcript +SO:0000650 small_subunit_rRNA +SO:0000651 large_subunit_rRNA +SO:0000652 rRNA_5S +SO:0000653 rRNA_28S +SO:0000654 maxicircle_gene +SO:0000655 ncRNA +SO:0000656 stRNA_encoding +SO:0000657 repeat_region +SO:0000658 dispersed_repeat +SO:0000659 tmRNA_encoding +SO:0000660 DNA_invertase_target_sequence +SO:0000661 intron_attribute +SO:0000662 spliceosomal_intron +SO:0000663 tRNA_encoding +SO:0000664 introgressed_chromosome_region +SO:0000665 monocistronic_transcript +SO:0000666 mobile_intron +SO:0000667 insertion +SO:0000668 EST_match +SO:0000669 sequence_rearrangement_feature +SO:0000670 chromosome_breakage_sequence +SO:0000671 internal_eliminated_sequence +SO:0000672 macronucleus_destined_segment +SO:0000673 transcript +SO:0000674 non_canonical_splice_site +SO:0000675 canonical_splice_site +SO:0000676 canonical_three_prime_splice_site +SO:0000677 canonical_five_prime_splice_site +SO:0000678 non_canonical_three_prime_splice_site +SO:0000679 non_canonical_five_prime_splice_site +SO:0000680 non_canonical_start_codon +SO:0000681 aberrant_processed_transcript +SO:0000682 splicing_feature +SO:0000683 exonic_splice_enhancer +SO:0000684 nuclease_sensitive_site +SO:0000685 DNAseI_hypersensitive_site +SO:0000686 translocation_element +SO:0000687 deletion_junction +SO:0000688 golden_path +SO:0000689 cDNA_match +SO:0000690 gene_with_polycistronic_transcript +SO:0000691 cleaved_initiator_methionine +SO:0000692 gene_with_dicistronic_transcript +SO:0000693 gene_with_recoded_mRNA +SO:0000694 SNP +SO:0000695 reagent +SO:0000696 oligo +SO:0000697 gene_with_stop_codon_read_through +SO:0000698 gene_with_stop_codon_redefined_as_pyrrolysine +SO:0000699 junction +SO:0000700 remark +SO:0000701 possible_base_call_error +SO:0000702 possible_assembly_error +SO:0000703 experimental_result_region +SO:0000704 gene +SO:0000705 tandem_repeat +SO:0000706 trans_splice_acceptor_site +SO:0000707 trans_splice_donor_site +SO:0000708 SL1_acceptor_site +SO:0000709 SL2_acceptor_site +SO:0000710 gene_with_stop_codon_redefined_as_selenocysteine +SO:0000711 gene_with_mRNA_recoded_by_translational_bypass +SO:0000712 gene_with_transcript_with_translational_frameshift +SO:0000713 DNA_motif +SO:0000714 nucleotide_motif +SO:0000715 RNA_motif +SO:0000716 dicistronic_mRNA +SO:0000717 reading_frame +SO:0000718 blocked_reading_frame +SO:0000719 ultracontig +SO:0000720 foreign_transposable_element +SO:0000721 gene_with_dicistronic_primary_transcript +SO:0000722 gene_with_dicistronic_mRNA +SO:0000723 iDNA +SO:0000724 oriT +SO:0000725 transit_peptide +SO:0000726 repeat_unit +SO:0000727 CRM +SO:0000728 intein +SO:0000729 intein_containing +SO:0000730 gap +SO:0000731 fragmentary +SO:0000732 predicted +SO:0000733 feature_attribute +SO:0000734 exemplar_mRNA +SO:0000735 sequence_location +SO:0000736 organelle_sequence +SO:0000737 mitochondrial_sequence +SO:0000738 nuclear_sequence +SO:0000739 nucleomorphic_sequence +SO:0000740 plastid_sequence +SO:0000741 kinetoplast +SO:0000742 maxicircle +SO:0000743 apicoplast_sequence +SO:0000744 chromoplast_sequence +SO:0000745 chloroplast_sequence +SO:0000746 cyanelle_sequence +SO:0000747 leucoplast_sequence +SO:0000748 proplastid_sequence +SO:0000749 plasmid_location +SO:0000750 amplification_origin +SO:0000751 proviral_location +SO:0000752 gene_group_regulatory_region +SO:0000753 clone_insert +SO:0000754 lambda_vector +SO:0000755 plasmid_vector +SO:0000756 cDNA +SO:0000757 single_stranded_cDNA +SO:0000758 double_stranded_cDNA +SO:0000759 plasmid_clone +SO:0000760 YAC_clone +SO:0000761 phagemid_clone +SO:0000762 PAC_clone +SO:0000763 fosmid_clone +SO:0000764 BAC_clone +SO:0000765 cosmid_clone +SO:0000766 pyrrolysyl_tRNA +SO:0000767 clone_insert_start +SO:0000768 episome +SO:0000769 tmRNA_coding_piece +SO:0000770 tmRNA_acceptor_piece +SO:0000771 QTL +SO:0000772 genomic_island +SO:0000773 pathogenic_island +SO:0000774 metabolic_island +SO:0000775 adaptive_island +SO:0000776 symbiosis_island +SO:0000777 pseudogenic_rRNA +SO:0000778 pseudogenic_tRNA +SO:0000779 engineered_episome +SO:0000780 transposable_element_attribute +SO:0000781 transgenic +SO:0000782 natural +SO:0000783 engineered +SO:0000784 foreign +SO:0000785 cloned_region +SO:0000786 reagent_attribute +SO:0000787 clone_attribute +SO:0000788 cloned +SO:0000789 validated +SO:0000790 invalidated +SO:0000791 cloned_genomic +SO:0000792 cloned_cDNA +SO:0000793 engineered_DNA +SO:0000794 engineered_rescue_region +SO:0000795 rescue_mini_gene +SO:0000796 transgenic_transposable_element +SO:0000797 natural_transposable_element +SO:0000798 engineered_transposable_element +SO:0000799 engineered_foreign_transposable_element +SO:0000800 assortment_derived_duplication +SO:0000801 assortment_derived_deficiency_plus_duplication +SO:0000802 assortment_derived_deficiency +SO:0000803 assortment_derived_aneuploid +SO:0000804 engineered_region +SO:0000805 engineered_foreign_region +SO:0000806 fusion +SO:0000807 engineered_tag +SO:0000808 validated_cDNA_clone +SO:0000809 invalidated_cDNA_clone +SO:0000810 chimeric_cDNA_clone +SO:0000811 genomically_contaminated_cDNA_clone +SO:0000812 polyA_primed_cDNA_clone +SO:0000813 partially_processed_cDNA_clone +SO:0000814 rescue +SO:0000815 mini_gene +SO:0000816 rescue_gene +SO:0000817 wild_type +SO:0000818 wild_type_rescue_gene +SO:0000819 mitochondrial_chromosome +SO:0000820 chloroplast_chromosome +SO:0000821 chromoplast_chromosome +SO:0000822 cyanelle_chromosome +SO:0000823 leucoplast_chromosome +SO:0000824 macronuclear_chromosome +SO:0000825 micronuclear_chromosome +SO:0000828 nuclear_chromosome +SO:0000829 nucleomorphic_chromosome +SO:0000830 chromosome_part +SO:0000831 gene_member_region +SO:0000832 promoter_region +SO:0000833 transcript_region +SO:0000834 mature_transcript_region +SO:0000835 primary_transcript_region +SO:0000836 mRNA_region +SO:0000837 UTR_region +SO:0000838 rRNA_primary_transcript_region +SO:0000839 polypeptide_region +SO:0000840 repeat_component +SO:0000841 spliceosomal_intron_region +SO:0000842 gene_component_region +SO:0000843 bacterial_RNApol_promoter_region +SO:0000844 RNApol_II_promoter_region +SO:0000845 RNApol_III_promoter_type_1_region +SO:0000846 RNApol_III_promoter_type_2_region +SO:0000847 tmRNA_region +SO:0000848 LTR_component +SO:0000849 three_prime_LTR_component +SO:0000850 five_prime_LTR_component +SO:0000851 CDS_region +SO:0000852 exon_region +SO:0000853 homologous_region +SO:0000854 paralogous_region +SO:0000855 orthologous_region +SO:0000856 conserved +SO:0000857 homologous +SO:0000858 orthologous +SO:0000859 paralogous +SO:0000860 syntenic +SO:0000861 capped_primary_transcript +SO:0000862 capped_mRNA +SO:0000863 mRNA_attribute +SO:0000864 exemplar +SO:0000865 frameshift +SO:0000866 minus_1_frameshift +SO:0000867 minus_2_frameshift +SO:0000868 plus_1_frameshift +SO:0000869 plus_2_framshift +SO:0000870 trans_spliced +SO:0000871 polyadenylated_mRNA +SO:0000872 trans_spliced_mRNA +SO:0000873 edited_transcript +SO:0000874 edited_transcript_by_A_to_I_substitution +SO:0000875 bound_by_protein +SO:0000876 bound_by_nucleic_acid +SO:0000877 alternatively_spliced +SO:0000878 monocistronic +SO:0000879 dicistronic +SO:0000880 polycistronic +SO:0000881 recoded +SO:0000882 codon_redefined +SO:0000883 stop_codon_read_through +SO:0000884 stop_codon_redefined_as_pyrrolysine +SO:0000885 stop_codon_redefined_as_selenocysteine +SO:0000886 recoded_by_translational_bypass +SO:0000887 translationally_frameshifted +SO:0000888 maternally_imprinted_gene +SO:0000889 paternally_imprinted_gene +SO:0000890 post_translationally_regulated_gene +SO:0000891 negatively_autoregulated_gene +SO:0000892 positively_autoregulated_gene +SO:0000893 silenced +SO:0000894 silenced_by_DNA_modification +SO:0000895 silenced_by_DNA_methylation +SO:0000896 translationally_regulated_gene +SO:0000897 allelically_excluded_gene +SO:0000898 epigenetically_modified_gene +SO:0000899 nuclear_mitochondrial +SO:0000900 processed +SO:0000901 unequally_crossed_over +SO:0000902 transgene +SO:0000903 endogenous_retroviral_sequence +SO:0000904 rearranged_at_DNA_level +SO:0000905 status +SO:0000906 independently_known +SO:0000907 supported_by_sequence_similarity +SO:0000908 supported_by_domain_match +SO:0000909 supported_by_EST_or_cDNA +SO:0000910 orphan +SO:0000911 predicted_by_ab_initio_computation +SO:0000912 asx_turn +SO:0000913 cloned_cDNA_insert +SO:0000914 cloned_genomic_insert +SO:0000915 engineered_insert +SO:0000916 edit_operation +SO:0000917 insert_U +SO:0000918 delete_U +SO:0000919 substitute_A_to_I +SO:0000920 insert_C +SO:0000921 insert_dinucleotide +SO:0000922 substitute_C_to_U +SO:0000923 insert_G +SO:0000924 insert_GC +SO:0000925 insert_GU +SO:0000926 insert_CU +SO:0000927 insert_AU +SO:0000928 insert_AA +SO:0000929 edited_mRNA +SO:0000930 guide_RNA_region +SO:0000931 anchor_region +SO:0000932 pre_edited_mRNA +SO:0000933 intermediate +SO:0000934 miRNA_target_site +SO:0000935 edited_CDS +SO:0000936 vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment +SO:0000937 vertebrate_immune_system_feature +SO:0000938 vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster +SO:0000939 vertebrate_immune_system_gene_recombination_signal_feature +SO:0000940 recombinationally_rearranged +SO:0000941 recombinationally_rearranged_vertebrate_immune_system_gene +SO:0000942 attP_site +SO:0000943 attB_site +SO:0000944 attL_site +SO:0000945 attR_site +SO:0000946 integration_excision_site +SO:0000947 resolution_site +SO:0000948 inversion_site +SO:0000949 dif_site +SO:0000950 attC_site +SO:0000951 eukaryotic_terminator +SO:0000952 oriV +SO:0000953 oriC +SO:0000954 DNA_chromosome +SO:0000955 double_stranded_DNA_chromosome +SO:0000956 single_stranded_DNA_chromosome +SO:0000957 linear_double_stranded_DNA_chromosome +SO:0000958 circular_double_stranded_DNA_chromosome +SO:0000959 linear_single_stranded_DNA_chromosome +SO:0000960 circular_single_stranded_DNA_chromosome +SO:0000961 RNA_chromosome +SO:0000962 single_stranded_RNA_chromosome +SO:0000963 linear_single_stranded_RNA_chromosome +SO:0000964 linear_double_stranded_RNA_chromosome +SO:0000965 double_stranded_RNA_chromosome +SO:0000966 circular_single_stranded_RNA_chromosome +SO:0000967 circular_double_stranded_RNA_chromosome +SO:0000968 sequence_replication_mode +SO:0000969 rolling_circle +SO:0000970 theta_replication +SO:0000971 DNA_replication_mode +SO:0000972 RNA_replication_mode +SO:0000973 insertion_sequence +SO:0000975 minicircle_gene +SO:0000976 cryptic +SO:0000977 anchor_binding_site +SO:0000978 template_region +SO:0000979 gRNA_encoding +SO:0000980 minicircle +SO:0000981 rho_dependent_bacterial_terminator +SO:0000982 rho_independent_bacterial_terminator +SO:0000983 strand_attribute +SO:0000984 single +SO:0000985 double +SO:0000986 topology_attribute +SO:0000987 linear +SO:0000988 circular +SO:0000989 class_II_RNA +SO:0000990 class_I_RNA +SO:0000991 genomic_DNA +SO:0000992 BAC_cloned_genomic_insert +SO:0000993 consensus +SO:0000994 consensus_region +SO:0000995 consensus_mRNA +SO:0000996 predicted_gene +SO:0000997 gene_fragment +SO:0000998 recursive_splice_site +SO:0000999 BAC_end +SO:0001000 rRNA_16S +SO:0001001 rRNA_23S +SO:0001002 rRNA_25S +SO:0001003 solo_LTR +SO:0001004 low_complexity +SO:0001005 low_complexity_region +SO:0001006 prophage +SO:0001007 cryptic_prophage +SO:0001008 tetraloop +SO:0001009 DNA_constraint_sequence +SO:0001010 i_motif +SO:0001011 PNA_oligo +SO:0001012 DNAzyme +SO:0001013 MNP +SO:0001014 intron_domain +SO:0001015 wobble_base_pair +SO:0001016 internal_guide_sequence +SO:0001017 silent_mutation +SO:0001018 epitope +SO:0001019 copy_number_variation +SO:0001020 sequence_variant_affecting_copy_number +SO:0001021 chromosome_breakpoint +SO:0001022 inversion_breakpoint +SO:0001023 allele +SO:0001024 haplotype +SO:0001025 polymorphic_sequence_variant +SO:0001026 genome +SO:0001027 genotype +SO:0001028 diplotype +SO:0001029 direction_attribute +SO:0001030 forward +SO:0001031 reverse +SO:0001032 mitochondrial_DNA +SO:0001033 chloroplast_DNA +SO:0001034 miRtron +SO:0001035 piRNA +SO:0001036 arginyl_tRNA +SO:0001037 mobile_genetic_element +SO:0001038 extrachromosomal_mobile_genetic_element +SO:0001039 integrated_mobile_genetic_element +SO:0001040 integrated_plasmid +SO:0001041 viral_sequence +SO:0001042 phage_sequence +SO:0001043 attCtn_site +SO:0001044 nuclear_mt_pseudogene +SO:0001045 cointegrated_plasmid +SO:0001046 IRLinv_site +SO:0001047 IRRinv_site +SO:0001048 inversion_site_part +SO:0001049 defective_conjugative_transposon +SO:0001050 repeat_fragment +SO:0001051 nested_region +SO:0001052 nested_repeat +SO:0001053 nested_transposon +SO:0001054 transposon_fragment +SO:0001055 transcriptional_cis_regulatory_region +SO:0001056 splicing_regulatory_region +SO:0001057 enhanceosome +SO:0001058 promoter_targeting_sequence +SO:0001059 sequence_alteration +SO:0001060 sequence_variant +SO:0001061 propeptide_cleavage_site +SO:0001062 propeptide +SO:0001063 immature_peptide_region +SO:0001064 active_peptide +SO:0001066 compositionally_biased_region_of_peptide +SO:0001067 polypeptide_motif +SO:0001068 polypeptide_repeat +SO:0001070 polypeptide_structural_region +SO:0001071 membrane_structure +SO:0001072 extramembrane_polypeptide_region +SO:0001073 cytoplasmic_polypeptide_region +SO:0001074 non_cytoplasmic_polypeptide_region +SO:0001075 intramembrane_polypeptide_region +SO:0001076 membrane_peptide_loop +SO:0001077 transmembrane_polypeptide_region +SO:0001078 polypeptide_secondary_structure +SO:0001079 polypeptide_structural_motif +SO:0001080 coiled_coil +SO:0001081 helix_turn_helix +SO:0001082 polypeptide_sequencing_information +SO:0001083 non_adjacent_residues +SO:0001084 non_terminal_residue +SO:0001085 sequence_conflict +SO:0001086 sequence_uncertainty +SO:0001087 cross_link +SO:0001088 disulfide_bond +SO:0001089 post_translationally_modified_region +SO:0001090 covalent_binding_site +SO:0001091 non_covalent_binding_site +SO:0001092 polypeptide_metal_contact +SO:0001093 protein_protein_contact +SO:0001094 polypeptide_calcium_ion_contact_site +SO:0001095 polypeptide_cobalt_ion_contact_site +SO:0001096 polypeptide_copper_ion_contact_site +SO:0001097 polypeptide_iron_ion_contact_site +SO:0001098 polypeptide_magnesium_ion_contact_site +SO:0001099 polypeptide_manganese_ion_contact_site +SO:0001100 polypeptide_molybdenum_ion_contact_site +SO:0001101 polypeptide_nickel_ion_contact_site +SO:0001102 polypeptide_tungsten_ion_contact_site +SO:0001103 polypeptide_zinc_ion_contact_site +SO:0001104 catalytic_residue +SO:0001105 polypeptide_ligand_contact +SO:0001106 asx_motif +SO:0001107 beta_bulge +SO:0001108 beta_bulge_loop +SO:0001109 beta_bulge_loop_five +SO:0001110 beta_bulge_loop_six +SO:0001111 beta_strand +SO:0001112 antiparallel_beta_strand +SO:0001113 parallel_beta_strand +SO:0001114 peptide_helix +SO:0001115 left_handed_peptide_helix +SO:0001116 right_handed_peptide_helix +SO:0001117 alpha_helix +SO:0001118 pi_helix +SO:0001119 three_ten_helix +SO:0001120 polypeptide_nest_motif +SO:0001121 polypeptide_nest_left_right_motif +SO:0001122 polypeptide_nest_right_left_motif +SO:0001123 schellmann_loop +SO:0001124 schellmann_loop_seven +SO:0001125 schellmann_loop_six +SO:0001126 serine_threonine_motif +SO:0001127 serine_threonine_staple_motif +SO:0001128 polypeptide_turn_motif +SO:0001129 asx_turn_left_handed_type_one +SO:0001130 asx_turn_left_handed_type_two +SO:0001131 asx_turn_right_handed_type_two +SO:0001132 asx_turn_right_handed_type_one +SO:0001133 beta_turn +SO:0001134 beta_turn_left_handed_type_one +SO:0001135 beta_turn_left_handed_type_two +SO:0001136 beta_turn_right_handed_type_one +SO:0001137 beta_turn_right_handed_type_two +SO:0001138 gamma_turn +SO:0001139 gamma_turn_classic +SO:0001140 gamma_turn_inverse +SO:0001141 serine_threonine_turn +SO:0001142 st_turn_left_handed_type_one +SO:0001143 st_turn_left_handed_type_two +SO:0001144 st_turn_right_handed_type_one +SO:0001145 st_turn_right_handed_type_two +SO:0001146 polypeptide_variation_site +SO:0001147 natural_variant_site +SO:0001148 mutated_variant_site +SO:0001149 alternate_sequence_site +SO:0001150 beta_turn_type_six +SO:0001151 beta_turn_type_six_a +SO:0001152 beta_turn_type_six_a_one +SO:0001153 beta_turn_type_six_a_two +SO:0001154 beta_turn_type_six_b +SO:0001155 beta_turn_type_eight +SO:0001156 DRE_motif +SO:0001157 DMv4_motif +SO:0001158 E_box_motif +SO:0001159 DMv5_motif +SO:0001160 DMv3_motif +SO:0001161 DMv2_motif +SO:0001162 MTE +SO:0001163 INR1_motif +SO:0001164 DPE1_motif +SO:0001165 DMv1_motif +SO:0001166 GAGA_motif +SO:0001167 NDM2_motif +SO:0001168 NDM3_motif +SO:0001169 ds_RNA_viral_sequence +SO:0001170 polinton +SO:0001171 rRNA_21S +SO:0001172 tRNA_region +SO:0001173 anticodon_loop +SO:0001174 anticodon +SO:0001175 CCA_tail +SO:0001176 DHU_loop +SO:0001177 T_loop +SO:0001178 pyrrolysine_tRNA_primary_transcript +SO:0001179 U3_snoRNA +SO:0001180 AU_rich_element +SO:0001181 Bruno_response_element +SO:0001182 iron_responsive_element +SO:0001183 morpholino_backbone +SO:0001184 PNA +SO:0001185 enzymatic +SO:0001186 ribozymic +SO:0001187 pseudouridylation_guide_snoRNA +SO:0001188 LNA +SO:0001189 LNA_oligo +SO:0001190 TNA +SO:0001191 TNA_oligo +SO:0001192 GNA +SO:0001193 GNA_oligo +SO:0001194 R_GNA +SO:0001195 R_GNA_oligo +SO:0001196 S_GNA +SO:0001197 S_GNA_oligo +SO:0001198 ds_DNA_viral_sequence +SO:0001199 ss_RNA_viral_sequence +SO:0001200 negative_sense_ssRNA_viral_sequence +SO:0001201 positive_sense_ssRNA_viral_sequence +SO:0001202 ambisense_ssRNA_viral_sequence +SO:0001203 RNA_polymerase_promoter +SO:0001204 Phage_RNA_Polymerase_Promoter +SO:0001205 SP6_RNA_Polymerase_Promoter +SO:0001206 T3_RNA_Polymerase_Promoter +SO:0001207 T7_RNA_Polymerase_Promoter +SO:0001208 five_prime_EST +SO:0001209 three_prime_EST +SO:0001210 translational_frameshift +SO:0001211 plus_1_translational_frameshift +SO:0001212 plus_2_translational_frameshift +SO:0001213 group_III_intron +SO:0001214 noncoding_region_of_exon +SO:0001215 coding_region_of_exon +SO:0001216 endonuclease_spliced_intron +SO:0001217 protein_coding_gene +SO:0001218 transgenic_insertion +SO:0001219 retrogene +SO:0001220 silenced_by_RNA_interference +SO:0001221 silenced_by_histone_modification +SO:0001222 silenced_by_histone_methylation +SO:0001223 silenced_by_histone_deacetylation +SO:0001224 gene_silenced_by_RNA_interference +SO:0001225 gene_silenced_by_histone_modification +SO:0001226 gene_silenced_by_histone_methylation +SO:0001227 gene_silenced_by_histone_deacetylation +SO:0001228 dihydrouridine +SO:0001229 pseudouridine +SO:0001230 inosine +SO:0001231 seven_methylguanine +SO:0001232 ribothymidine +SO:0001233 methylinosine +SO:0001234 mobile +SO:0001235 replicon +SO:0001236 base +SO:0001237 amino_acid +SO:0001238 major_TSS +SO:0001239 minor_TSS +SO:0001240 TSS_region +SO:0001241 encodes_alternate_transcription_start_sites +SO:0001243 miRNA_primary_transcript_region +SO:0001244 pre_miRNA +SO:0001245 miRNA_stem +SO:0001246 miRNA_loop +SO:0001247 synthetic_oligo +SO:0001248 assembly +SO:0001249 fragment_assembly +SO:0001250 fingerprint_map +SO:0001251 STS_map +SO:0001252 RH_map +SO:0001253 sonicate_fragment +SO:0001254 polyploid +SO:0001255 autopolyploid +SO:0001256 allopolyploid +SO:0001257 homing_endonuclease_binding_site +SO:0001258 octamer_motif +SO:0001259 apicoplast_chromosome +SO:0001260 sequence_collection +SO:0001261 overlapping_feature_set +SO:0001262 overlapping_EST_set +SO:0001263 ncRNA_gene +SO:0001264 gRNA_gene +SO:0001265 miRNA_gene +SO:0001266 scRNA_gene +SO:0001267 snoRNA_gene +SO:0001268 snRNA_gene +SO:0001269 SRP_RNA_gene +SO:0001271 tmRNA_gene +SO:0001272 tRNA_gene +SO:0001273 modified_adenosine +SO:0001274 modified_inosine +SO:0001275 modified_cytidine +SO:0001276 modified_guanosine +SO:0001277 modified_uridine +SO:0001278 one_methylinosine +SO:0001279 one_two_prime_O_dimethylinosine +SO:0001280 two_prime_O_methylinosine +SO:0001281 three_methylcytidine +SO:0001282 five_methylcytidine +SO:0001283 two_prime_O_methylcytidine +SO:0001284 two_thiocytidine +SO:0001285 N4_acetylcytidine +SO:0001286 five_formylcytidine +SO:0001287 five_two_prime_O_dimethylcytidine +SO:0001288 N4_acetyl_2_prime_O_methylcytidine +SO:0001289 lysidine +SO:0001290 N4_methylcytidine +SO:0001291 N4_2_prime_O_dimethylcytidine +SO:0001292 five_hydroxymethylcytidine +SO:0001293 five_formyl_two_prime_O_methylcytidine +SO:0001294 N4_N4_2_prime_O_trimethylcytidine +SO:0001295 one_methyladenosine +SO:0001296 two_methyladenosine +SO:0001297 N6_methyladenosine +SO:0001298 two_prime_O_methyladenosine +SO:0001299 two_methylthio_N6_methyladenosine +SO:0001300 N6_isopentenyladenosine +SO:0001301 two_methylthio_N6_isopentenyladenosine +SO:0001302 N6_cis_hydroxyisopentenyl_adenosine +SO:0001303 two_methylthio_N6_cis_hydroxyisopentenyl_adenosine +SO:0001304 N6_glycinylcarbamoyladenosine +SO:0001305 N6_threonylcarbamoyladenosine +SO:0001306 two_methylthio_N6_threonyl_carbamoyladenosine +SO:0001307 N6_methyl_N6_threonylcarbamoyladenosine +SO:0001308 N6_hydroxynorvalylcarbamoyladenosine +SO:0001309 two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine +SO:0001310 two_prime_O_ribosyladenosine_phosphate +SO:0001311 N6_N6_dimethyladenosine +SO:0001312 N6_2_prime_O_dimethyladenosine +SO:0001313 N6_N6_2_prime_O_trimethyladenosine +SO:0001314 one_two_prime_O_dimethyladenosine +SO:0001315 N6_acetyladenosine +SO:0001316 seven_deazaguanosine +SO:0001317 queuosine +SO:0001318 epoxyqueuosine +SO:0001319 galactosyl_queuosine +SO:0001320 mannosyl_queuosine +SO:0001321 seven_cyano_seven_deazaguanosine +SO:0001322 seven_aminomethyl_seven_deazaguanosine +SO:0001323 archaeosine +SO:0001324 one_methylguanosine +SO:0001325 N2_methylguanosine +SO:0001326 seven_methylguanosine +SO:0001327 two_prime_O_methylguanosine +SO:0001328 N2_N2_dimethylguanosine +SO:0001329 N2_2_prime_O_dimethylguanosine +SO:0001330 N2_N2_2_prime_O_trimethylguanosine +SO:0001331 two_prime_O_ribosylguanosine_phosphate +SO:0001332 wybutosine +SO:0001333 peroxywybutosine +SO:0001334 hydroxywybutosine +SO:0001335 undermodified_hydroxywybutosine +SO:0001336 wyosine +SO:0001337 methylwyosine +SO:0001338 N2_7_dimethylguanosine +SO:0001339 N2_N2_7_trimethylguanosine +SO:0001340 one_two_prime_O_dimethylguanosine +SO:0001341 four_demethylwyosine +SO:0001342 isowyosine +SO:0001343 N2_7_2prirme_O_trimethylguanosine +SO:0001344 five_methyluridine +SO:0001345 two_prime_O_methyluridine +SO:0001346 five_two_prime_O_dimethyluridine +SO:0001347 one_methylpseudouridine +SO:0001348 two_prime_O_methylpseudouridine +SO:0001349 two_thiouridine +SO:0001350 four_thiouridine +SO:0001351 five_methyl_2_thiouridine +SO:0001352 two_thio_two_prime_O_methyluridine +SO:0001353 three_three_amino_three_carboxypropyl_uridine +SO:0001354 five_hydroxyuridine +SO:0001355 five_methoxyuridine +SO:0001356 uridine_five_oxyacetic_acid +SO:0001357 uridine_five_oxyacetic_acid_methyl_ester +SO:0001358 five_carboxyhydroxymethyl_uridine +SO:0001359 five_carboxyhydroxymethyl_uridine_methyl_ester +SO:0001360 five_methoxycarbonylmethyluridine +SO:0001361 five_methoxycarbonylmethyl_two_prime_O_methyluridine +SO:0001362 five_methoxycarbonylmethyl_two_thiouridine +SO:0001363 five_aminomethyl_two_thiouridine +SO:0001364 five_methylaminomethyluridine +SO:0001365 five_methylaminomethyl_two_thiouridine +SO:0001366 five_methylaminomethyl_two_selenouridine +SO:0001367 five_carbamoylmethyluridine +SO:0001368 five_carbamoylmethyl_two_prime_O_methyluridine +SO:0001369 five_carboxymethylaminomethyluridine +SO:0001370 five_carboxymethylaminomethyl_two_prime_O_methyluridine +SO:0001371 five_carboxymethylaminomethyl_two_thiouridine +SO:0001372 three_methyluridine +SO:0001373 one_methyl_three_three_amino_three_carboxypropyl_pseudouridine +SO:0001374 five_carboxymethyluridine +SO:0001375 three_two_prime_O_dimethyluridine +SO:0001376 five_methyldihydrouridine +SO:0001377 three_methylpseudouridine +SO:0001378 five_taurinomethyluridine +SO:0001379 five_taurinomethyl_two_thiouridine +SO:0001380 five_isopentenylaminomethyl_uridine +SO:0001381 five_isopentenylaminomethyl_two_thiouridine +SO:0001382 five_isopentenylaminomethyl_two_prime_O_methyluridine +SO:0001383 histone_binding_site +SO:0001384 CDS_fragment +SO:0001385 modified_amino_acid_feature +SO:0001386 modified_glycine +SO:0001387 modified_L_alanine +SO:0001388 modified_L_asparagine +SO:0001389 modified_L_aspartic_acid +SO:0001390 modified_L_cysteine +SO:0001391 modified_L_glutamic_acid +SO:0001392 modified_L_threonine +SO:0001393 modified_L_tryptophan +SO:0001394 modified_L_glutamine +SO:0001395 modified_L_methionine +SO:0001396 modified_L_isoleucine +SO:0001397 modified_L_phenylalanine +SO:0001398 modified_L_histidine +SO:0001399 modified_L_serine +SO:0001400 modified_L_lysine +SO:0001401 modified_L_leucine +SO:0001402 modified_L_selenocysteine +SO:0001403 modified_L_valine +SO:0001404 modified_L_proline +SO:0001405 modified_L_tyrosine +SO:0001406 modified_L_arginine +SO:0001407 peptidyl +SO:0001408 cleaved_for_gpi_anchor_region +SO:0001409 biomaterial_region +SO:0001410 experimental_feature +SO:0001411 biological_region +SO:0001412 topologically_defined_region +SO:0001413 translocation_breakpoint +SO:0001414 insertion_breakpoint +SO:0001415 deletion_breakpoint +SO:0001416 five_prime_flanking_region +SO:0001417 three_prime_flanking_region +SO:0001418 transcribed_fragment +SO:0001419 cis_splice_site +SO:0001420 trans_splice_site +SO:0001421 splice_junction +SO:0001422 conformational_switch +SO:0001423 dye_terminator_read +SO:0001424 pyrosequenced_read +SO:0001425 ligation_based_read +SO:0001426 polymerase_synthesis_read +SO:0001427 cis_regulatory_frameshift_element +SO:0001428 expressed_sequence_assembly +SO:0001429 DNA_binding_site +SO:0001431 cryptic_gene +SO:0001432 sequence_variant_affecting_polyadenylation +SO:0001433 three_prime_RACE_clone +SO:0001434 cassette_pseudogene +SO:0001435 alanine +SO:0001436 valine +SO:0001437 leucine +SO:0001438 isoleucine +SO:0001439 proline +SO:0001440 tryptophan +SO:0001441 phenylalanine +SO:0001442 methionine +SO:0001443 glycine +SO:0001444 serine +SO:0001445 threonine +SO:0001446 tyrosine +SO:0001447 cysteine +SO:0001448 glutamine +SO:0001449 asparagine +SO:0001450 lysine +SO:0001451 arginine +SO:0001452 histidine +SO:0001453 aspartic_acid +SO:0001454 glutamic_acid +SO:0001455 selenocysteine +SO:0001456 pyrrolysine +SO:0001457 transcribed_cluster +SO:0001458 unigene_cluster +SO:0001459 CRISPR +SO:0001460 insulator_binding_site +SO:0001461 enhancer_binding_site +SO:0001462 contig_collection +SO:0001463 lincRNA +SO:0001464 UST +SO:0001465 three_prime_UST +SO:0001466 five_prime_UST +SO:0001467 RST +SO:0001468 three_prime_RST +SO:0001469 five_prime_RST +SO:0001470 UST_match +SO:0001471 RST_match +SO:0001472 primer_match +SO:0001473 miRNA_antiguide +SO:0001474 trans_splice_junction +SO:0001475 outron +SO:0001476 natural_plasmid +SO:0001477 gene_trap_construct +SO:0001478 promoter_trap_construct +SO:0001479 enhancer_trap_construct +SO:0001480 PAC_end +SO:0001481 RAPD +SO:0001482 shadow_enhancer +SO:0001483 SNV +SO:0001484 X_element_combinatorial_repeat +SO:0001485 Y_prime_element +SO:0001486 standard_draft +SO:0001487 high_quality_draft +SO:0001488 improved_high_quality_draft +SO:0001489 annotation_directed_improved_draft +SO:0001490 noncontiguous_finished +SO:0001491 finished_genome +SO:0001492 intronic_regulatory_region +SO:0001493 centromere_DNA_Element_I +SO:0001494 centromere_DNA_Element_II +SO:0001495 centromere_DNA_Element_III +SO:0001496 telomeric_repeat +SO:0001497 X_element +SO:0001498 YAC_end +SO:0001499 whole_genome_sequence_status +SO:0001500 heritable_phenotypic_marker +SO:0001501 peptide_collection +SO:0001502 high_identity_region +SO:0001503 processed_transcript +SO:0001504 assortment_derived_variation +SO:0001505 reference_genome +SO:0001506 variant_genome +SO:0001507 variant_collection +SO:0001508 alteration_attribute +SO:0001509 chromosomal_variation_attribute +SO:0001510 intrachromosomal +SO:0001511 interchromosomal +SO:0001512 insertion_attribute +SO:0001513 tandem +SO:0001514 direct +SO:0001515 inverted +SO:0001516 free +SO:0001517 inversion_attribute +SO:0001518 pericentric +SO:0001519 paracentric +SO:0001520 translocaton_attribute +SO:0001521 reciprocal +SO:0001522 insertional +SO:0001523 duplication_attribute +SO:0001524 chromosomally_aberrant_genome +SO:0001525 assembly_error_correction +SO:0001526 base_call_error_correction +SO:0001527 peptide_localization_signal +SO:0001528 nuclear_localization_signal +SO:0001529 endosomal_localization_signal +SO:0001530 lysosomal_localization_signal +SO:0001531 nuclear_export_signal +SO:0001532 recombination_signal_sequence +SO:0001533 cryptic_splice_site +SO:0001534 nuclear_rim_localization_signal +SO:0001535 p_element +SO:0001536 functional_variant +SO:0001537 structural_variant +SO:0001538 transcript_function_variant +SO:0001539 translational_product_function_variant +SO:0001540 level_of_transcript_variant +SO:0001541 decreased_transcript_level_variant +SO:0001542 increased_transcript_level_variant +SO:0001543 transcript_processing_variant +SO:0001544 editing_variant +SO:0001545 polyadenylation_variant +SO:0001546 transcript_stability_variant +SO:0001547 decreased_transcript_stability_variant +SO:0001548 increased_transcript_stability_variant +SO:0001549 transcription_variant +SO:0001550 rate_of_transcription_variant +SO:0001551 increased_transcription_rate_variant +SO:0001552 decreased_transcription_rate_variant +SO:0001553 translational_product_level_variant +SO:0001554 polypeptide_function_variant +SO:0001555 decreased_translational_product_level +SO:0001556 increased_translational_product_level +SO:0001557 polypeptide_gain_of_function_variant +SO:0001558 polypeptide_localization_variant +SO:0001559 polypeptide_loss_of_function_variant +SO:0001560 inactive_ligand_binding_site +SO:0001561 polypeptide_partial_loss_of_function +SO:0001562 polypeptide_post_translational_processing_variant +SO:0001563 copy_number_change +SO:0001564 gene_variant +SO:0001565 gene_fusion +SO:0001566 regulatory_region_variant +SO:0001567 stop_retained_variant +SO:0001568 splicing_variant +SO:0001569 cryptic_splice_site_variant +SO:0001570 cryptic_splice_acceptor +SO:0001571 cryptic_splice_donor +SO:0001572 exon_loss_variant +SO:0001573 intron_gain_variant +SO:0001574 splice_acceptor_variant +SO:0001575 splice_donor_variant +SO:0001576 transcript_variant +SO:0001577 complex_transcript_variant +SO:0001578 stop_lost +SO:0001579 transcript_sequence_variant +SO:0001580 coding_sequence_variant +SO:0001582 initiator_codon_variant +SO:0001583 missense_variant +SO:0001585 conservative_missense_variant +SO:0001586 non_conservative_missense_variant +SO:0001587 stop_gained +SO:0001589 frameshift_variant +SO:0001590 terminator_codon_variant +SO:0001591 frame_restoring_variant +SO:0001592 minus_1_frameshift_variant +SO:0001593 minus_2_frameshift_variant +SO:0001594 plus_1_frameshift_variant +SO:0001595 plus_2_frameshift_variant +SO:0001596 transcript_secondary_structure_variant +SO:0001597 compensatory_transcript_secondary_structure_variant +SO:0001598 translational_product_structure_variant +SO:0001599 3D_polypeptide_structure_variant +SO:0001600 complex_3D_structural_variant +SO:0001601 conformational_change_variant +SO:0001602 complex_change_of_translational_product_variant +SO:0001603 polypeptide_sequence_variant +SO:0001604 amino_acid_deletion +SO:0001605 amino_acid_insertion +SO:0001606 amino_acid_substitution +SO:0001607 conservative_amino_acid_substitution +SO:0001608 non_conservative_amino_acid_substitution +SO:0001609 elongated_polypeptide +SO:0001610 elongated_polypeptide_C_terminal +SO:0001611 elongated_polypeptide_N_terminal +SO:0001612 elongated_in_frame_polypeptide_C_terminal +SO:0001613 elongated_out_of_frame_polypeptide_C_terminal +SO:0001614 elongated_in_frame_polypeptide_N_terminal_elongation +SO:0001615 elongated_out_of_frame_polypeptide_N_terminal +SO:0001616 polypeptide_fusion +SO:0001617 polypeptide_truncation +SO:0001618 inactive_catalytic_site +SO:0001619 non_coding_transcript_variant +SO:0001620 mature_miRNA_variant +SO:0001621 NMD_transcript_variant +SO:0001622 UTR_variant +SO:0001623 5_prime_UTR_variant +SO:0001624 3_prime_UTR_variant +SO:0001626 incomplete_terminal_codon_variant +SO:0001627 intron_variant +SO:0001628 intergenic_variant +SO:0001629 splice_site_variant +SO:0001630 splice_region_variant +SO:0001631 upstream_gene_variant +SO:0001632 downstream_gene_variant +SO:0001633 5KB_downstream_variant +SO:0001634 500B_downstream_variant +SO:0001635 5KB_upstream_variant +SO:0001636 2KB_upstream_variant +SO:0001637 rRNA_gene +SO:0001638 piRNA_gene +SO:0001639 RNase_P_RNA_gene +SO:0001640 RNase_MRP_RNA_gene +SO:0001641 lincRNA_gene +SO:0001642 mathematically_defined_repeat +SO:0001643 telomerase_RNA_gene +SO:0001644 targeting_vector +SO:0001645 genetic_marker +SO:0001646 DArT_marker +SO:0001647 kozak_sequence +SO:0001648 nested_transposon +SO:0001649 nested_repeat +SO:0001650 inframe_variant +SO:0001653 retinoic_acid_responsive_element +SO:0001654 nucleotide_to_protein_binding_site +SO:0001655 nucleotide_binding_site +SO:0001656 metal_binding_site +SO:0001657 ligand_binding_site +SO:0001658 nested_tandem_repeat +SO:0001659 promoter_element +SO:0001660 core_promoter_element +SO:0001661 RNA_polymerase_II_TATA_box +SO:0001662 RNA_polymerase_III_TATA_box +SO:0001663 BREd_motif +SO:0001664 DCE +SO:0001665 DCE_SI +SO:0001666 DCE_SII +SO:0001667 DCE_SIII +SO:0001668 proximal_promoter_element +SO:0001669 RNApol_II_core_promoter +SO:0001670 distal_promoter_element +SO:0001671 bacterial_RNApol_promoter_sigma_70 +SO:0001672 bacterial_RNApol_promoter_sigma54 +SO:0001673 minus_12_signal +SO:0001674 minus_24_signal +SO:0001675 A_box_type_1 +SO:0001676 A_box_type_2 +SO:0001677 intermediate_element +SO:0001678 regulatory_promoter_element +SO:0001679 transcription_regulatory_region +SO:0001680 translation_regulatory_region +SO:0001681 recombination_regulatory_region +SO:0001682 replication_regulatory_region +SO:0001683 sequence_motif +SO:0001684 experimental_feature_attribute +SO:0001685 score +SO:0001686 quality_value +SO:0001687 restriction_enzyme_recognition_site +SO:0001688 restriction_enzyme_cleavage_junction +SO:0001689 five_prime_restriction_enzyme_junction +SO:0001690 three_prime_restriction_enzyme_junction +SO:0001691 blunt_end_restriction_enzyme_cleavage_site +SO:0001692 sticky_end_restriction_enzyme_cleavage_site +SO:0001693 blunt_end_restriction_enzyme_cleavage_junction +SO:0001694 single_strand_restriction_enzyme_cleavage_site +SO:0001695 restriction_enzyme_single_strand_overhang +SO:0001696 experimentally_defined_binding_region +SO:0001697 ChIP_seq_region +SO:0001698 ASPE_primer +SO:0001699 dCAPS_primer +SO:0001700 histone_modification +SO:0001701 histone_methylation_site +SO:0001702 histone_acetylation_site +SO:0001703 H3K9_acetylation_site +SO:0001704 H3K14_acetylation_site +SO:0001705 H3K4_monomethylation_site +SO:0001706 H3K4_trimethylation +SO:0001707 H3K9_trimethylation_site +SO:0001708 H3K27_monomethylation_site +SO:0001709 H3K27_trimethylation_site +SO:0001710 H3K79_monomethylation_site +SO:0001711 H3K79_dimethylation_site +SO:0001712 H3K79_trimethylation_site +SO:0001713 H4K20_monomethylation_site +SO:0001714 H2BK5_monomethylation_site +SO:0001715 ISRE +SO:0001716 histone_ubiqitination_site +SO:0001717 H2B_ubiquitination_site +SO:0001718 H3K18_acetylation_site +SO:0001719 H3K23_acylation_site +SO:0001720 epigenetically_modified_region +SO:0001721 H3K27_acylation_site +SO:0001722 H3K36_monomethylation_site +SO:0001723 H3K36_dimethylation_site +SO:0001724 H3K36_trimethylation_site +SO:0001725 H3K4_dimethylation_site +SO:0001726 H3K27_dimethylation_site +SO:0001727 H3K9_monomethylation_site +SO:0001728 H3K9_dimethylation_site +SO:0001729 H4K16_acylation_site +SO:0001730 H4K5_acylation_site +SO:0001731 H4K8_acylation_site +SO:0001732 H3K27_methylation_site +SO:0001733 H3K36_methylation_site +SO:0001734 H3K4_methylation_site +SO:0001735 H3K79_methylation_site +SO:0001736 H3K9_methylation_site +SO:0001737 histone_acylation_region +SO:0001738 H4K_acylation_region +SO:0001739 gene_with_non_canonical_start_codon +SO:0001740 gene_with_start_codon_CUG +SO:0001741 pseudogenic_gene_segment +SO:0001742 copy_number_gain +SO:0001743 copy_number_loss +SO:0001744 UPD +SO:0001745 maternal_uniparental_disomy +SO:0001746 paternal_uniparental_disomy +SO:0001747 open_chromatin_region +SO:0001748 SL3_acceptor_site +SO:0001749 SL4_acceptor_site +SO:0001750 SL5_acceptor_site +SO:0001751 SL6_acceptor_site +SO:0001752 SL7_acceptor_site +SO:0001753 SL8_acceptor_site +SO:0001754 SL9_acceptor_site +SO:0001755 SL10_acceptor_site +SO:0001756 SL11_acceptor_site +SO:0001757 SL12_acceptor_site +SO:0001758 duplicated_pseudogene +SO:0001759 unitary_pseudogene +SO:0001760 non_processed_pseudogene +SO:0001761 variant_quality +SO:0001762 variant_origin +SO:0001763 variant_frequency +SO:0001764 unique_variant +SO:0001765 rare_variant +SO:0001766 polymorphic_variant +SO:0001767 common_variant +SO:0001768 fixed_variant +SO:0001769 variant_phenotype +SO:0001770 benign_variant +SO:0001771 disease_associated_variant +SO:0001772 disease_causing_variant +SO:0001773 lethal_variant +SO:0001774 quantitative_variant +SO:0001775 maternal_variant +SO:0001776 paternal_variant +SO:0001777 somatic_variant +SO:0001778 germline_variant +SO:0001779 pedigree_specific_variant +SO:0001780 population_specific_variant +SO:0001781 de_novo_variant +SO:0001782 TF_binding_site_variant +SO:0001784 complex_structural_alteration +SO:0001785 structural_alteration +SO:0001786 loss_of_heterozygosity +SO:0001787 splice_donor_5th_base_variant +SO:0001788 U_box +SO:0001789 mating_type_region +SO:0001790 paired_end_fragment +SO:0001791 exon_variant +SO:0001792 non_coding_transcript_exon_variant +SO:0001793 clone_end +SO:0001794 point_centromere +SO:0001795 regional_centromere +SO:0001796 regional_centromere_central_core +SO:0001797 centromeric_repeat +SO:0001798 regional_centromere_inner_repeat_region +SO:0001799 regional_centromere_outer_repeat_region +SO:0001800 tasiRNA +SO:0001801 tasiRNA_primary_transcript +SO:0001802 increased_polyadenylation_variant +SO:0001803 decreased_polyadenylation_variant +SO:0001804 DDB_box +SO:0001805 destruction_box +SO:0001806 ER_retention_signal +SO:0001807 KEN_box +SO:0001808 mitochondrial_targeting_signal +SO:0001809 signal_anchor +SO:0001810 PIP_box +SO:0001811 phosphorylation_site +SO:0001812 transmembrane_helix +SO:0001813 vacuolar_sorting_signal +SO:0001814 coding_variant_quality +SO:0001815 synonymous +SO:0001816 non_synonymous +SO:0001817 inframe +SO:0001818 protein_altering_variant +SO:0001819 synonymous_variant +SO:0001820 inframe_indel +SO:0001821 inframe_insertion +SO:0001822 inframe_deletion +SO:0001823 conservative_inframe_insertion +SO:0001824 disruptive_inframe_insertion +SO:0001825 conservative_inframe_deletion +SO:0001826 disruptive_inframe_deletion +SO:0001827 mRNA_read +SO:0001828 genomic_DNA_read +SO:0001829 mRNA_contig +SO:0001830 AFLP_fragment +SO:0001831 protein_hmm_match +SO:0001832 immunoglobulin_region +SO:0001833 V_region +SO:0001834 C_region +SO:0001835 N_region +SO:0001836 S_region +SO:0001837 mobile_element_insertion +SO:0001838 novel_sequence_insertion +SO:0001839 CSL_response_element +SO:0001840 GATA_box +SO:0001841 polymorphic_pseudogene +SO:0001842 AP_1_binding_site +SO:0001843 CRE +SO:0001844 CuRE +SO:0001845 DRE +SO:0001846 FLEX_element +SO:0001847 forkhead_motif +SO:0001848 homol_D_box +SO:0001849 homol_E_box +SO:0001850 HSE +SO:0001851 iron_repressed_GATA_element +SO:0001852 mating_type_M_box +SO:0001853 androgen_response_element +SO:0001854 smFISH_probe +SO:0001855 MCB +SO:0001856 CCAAT_motif +SO:0001857 Ace2_UAS +SO:0001858 TR_box +SO:0001859 STREP_motif +SO:0001860 rDNA_intergenic_spacer_element +SO:0001861 sterol_regulatory_element +SO:0001862 GT_dinucleotide_repeat +SO:0001863 GTT_trinucleotide_repeat +SO:0001864 Sap1_recognition_motif +SO:0001865 CDRE_motif +SO:0001866 BAC_read_contig +SO:0001867 candidate_gene +SO:0001868 positional_candidate_gene +SO:0001869 functional_candidate_gene +SO:0001870 enhancerRNA +SO:0001871 PCB +SO:0001872 rearrangement_region +SO:0001873 interchromosomal_breakpoint +SO:0001874 intrachromosomal_breakpoint +SO:0001875 unassigned_supercontig +SO:0001876 partial_genomic_sequence_assembly +SO:0001877 lnc_RNA +SO:0001878 feature_variant +SO:0001879 feature_ablation +SO:0001880 feature_amplification +SO:0001881 feature_translocation +SO:0001882 feature_fusion +SO:0001883 transcript_translocation +SO:0001884 regulatory_region_translocation +SO:0001885 TFBS_translocation +SO:0001886 transcript_fusion +SO:0001887 regulatory_region_fusion +SO:0001888 TFBS_fusion +SO:0001889 transcript_amplification +SO:0001890 transcript_regulatory_region_fusion +SO:0001891 regulatory_region_amplification +SO:0001892 TFBS_amplification +SO:0001893 transcript_ablation +SO:0001894 regulatory_region_ablation +SO:0001895 TFBS_ablation +SO:0001896 transposable_element_CDS +SO:0001897 transposable_element_pseudogene +SO:0001898 dg_repeat +SO:0001899 dh_repeat +SO:0001900 M26_binding_site +SO:0001901 AACCCT_box +SO:0001902 splice_region +SO:0001903 intronic_lncRNA +SO:0001904 antisense_lncRNA +SO:0001905 regional_centromere_outer_repeat_transcript +SO:0001906 feature_truncation +SO:0001907 feature_elongation +SO:0001908 internal_feature_elongation +SO:0001909 frameshift_elongation +SO:0001910 frameshift_truncation +SO:0001911 copy_number_increase +SO:0001912 copy_number_decrease +SO:0001913 bacterial_RNApol_promoter_sigma_ecf +SO:0001914 rDNA_replication_fork_barrier +SO:0001915 transcription_start_cluster +SO:0001916 CAGE_tag +SO:0001917 CAGE_cluster +SO:0001918 5_methylcytosine +SO:0001919 4_methylcytosine +SO:0001920 N6_methyladenine +SO:0001921 mitochondrial_contig +SO:0001922 mitochondrial_supercontig +SO:0001923 TERRA +SO:0001924 ARRET +SO:0001925 ARIA +SO:0001926 anti_ARRET +SO:0001927 telomeric_transcript +SO:0001928 distal_duplication +SO:0001929 mitochondrial_DNA_read +SO:0001930 chloroplast_DNA_read +SO:0001931 consensus_gDNA +SO:0001932 restriction_enzyme_five_prime_single_strand_overhang +SO:0001933 restriction_enzyme_three_prime_single_strand_overhang +SO:0001934 monomeric_repeat +SO:0001935 H3K20_trimethylation_site +SO:0001936 H3K36_acetylation_site +SO:0001937 H2BK12_acetylation_site +SO:0001938 H2AK5_acetylation_site +SO:0001939 H4K12_acetylation_site +SO:0001940 H2BK120_acetylation_site +SO:0001941 H4K91_acetylation_site +SO:0001942 H2BK20_acetylation_site +SO:0001943 H3K4ac_acetylation_site +SO:0001944 H2AK9_acetylation_site +SO:0001945 H3K56_acetylation_site +SO:0001946 H2BK15_acetylation_site +SO:0001947 H3R2_monomethylation_site +SO:0001948 H3R2_dimethylation_site +SO:0001949 H4R3_dimethylation_site +SO:0001950 H4K4_trimethylation_site +SO:0001951 H3K23_dimethylation_site +SO:0001952 promoter_flanking_region +SO:0001953 restriction_enzyme_assembly_scar +SO:0001954 restriction_enzyme_region +SO:0001955 protein_stability_element +SO:0001956 protease_site +SO:0001957 RNA_stability_element +SO:0001958 lariat_intron +SO:0001959 TCT_motif +SO:0001960 5_hydroxymethylcytosine +SO:0001961 5_formylcytosine +SO:0001962 modified_adenine +SO:0001963 modified_cytosine +SO:0001964 modified_guanine +SO:0001965 8_oxoguanine +SO:0001966 5_carboxylcytosine +SO:0001967 8_oxoadenine +SO:0001968 coding_transcript_variant +SO:0001969 coding_transcript_intron_variant +SO:0001970 non_coding_transcript_intron_variant +SO:0001971 zinc_finger_binding_site +SO:0001972 histone_4_acylation_site +SO:0001973 histone_3_acetylation_site +SO:0001974 CTCF_binding_site +SO:0001975 five_prime_sticky_end_restriction_enzyme_cleavage_site +SO:0001976 three_prime_sticky_end_restriction_enzyme_cleavage_site +SO:0001977 ribonuclease_site +SO:0001978 signature +SO:0001979 RNA_stability_element +SO:0001980 G_box +SO:0001981 L_box +SO:0001982 I-box +SO:0001983 5_prime_UTR_premature_start_codon_variant +SO:0001984 silent_mating_type_cassette_array +SO:0001985 Okazaki_fragment +SO:0001986 upstream_transcript_variant +SO:0001987 downstream_transcript_variant +SO:0001988 5_prime_UTR_premature_start_codon_gain_variant +SO:0001989 5_prime_UTR_premature_start_codon_loss_variant +SO:0001990 five_prime_UTR_premature_start_codon_location_variant +SO:0001991 consensus_AFLP_fragment +SO:0001992 nonsynonymous_variant +SO:0001993 extended_cis_splice_site +SO:0001994 intron_base_5 +SO:0001995 extended_intronic_splice_region_variant +SO:0001996 extended_intronic_splice_region +SO:0001997 subtelomere +SO:0001998 sgRNA +SO:0001999 mating_type_region_motif +SO:0002001 Y_region +SO:0002002 Z1_region +SO:0002003 Z2_region +SO:0002004 ARS_consensus_sequence +SO:0002005 DSR_motif +SO:0002006 zinc_repressed_element +SO:0002007 MNV +SO:0002008 rare_amino_acid_variant +SO:0002009 selenocysteine_loss +SO:0002010 pyrrolysine_loss +SO:0002011 intragenic_variant +SO:0002012 start_lost +SO:0002013 5_prime_UTR_truncation +SO:0002014 5_prime_UTR_elongation +SO:0002015 3_prime_UTR_truncation +SO:0002016 3_prime_UTR_elongation +SO:0002017 conserved_intergenic_variant +SO:0002018 conserved_intron_variant +SO:0002019 start_retained_variant +SO:0002020 boundary_element +SO:0002021 mating_type_region_replication_fork_barrier +SO:0002022 priRNA +SO:0002023 multiplexing_sequence_identifier +SO:0002024 W_region +SO:0002025 cis_acting_homologous_chromosome_pairing_region +SO:0002026 intein_encoding_region +SO:0002027 uORF +SO:0002028 sORF +SO:0002029 tnaORF +SO:0002030 X_region +SO:0002031 shRNA +SO:0002032 moR +SO:0002033 loR +SO:0002034 miR_encoding_snoRNA_primary_transcript +SO:0002035 lncRNA_primary_transcript +SO:0002036 miR_encoding_lncRNA_primary_transcript +SO:0002037 miR_encoding_tRNA_primary_transcript +SO:0002038 shRNA_primary_transcript +SO:0002039 miR_encoding_shRNA_primary_transcript +SO:0002040 vaultRNA_primary_transcript +SO:0002041 miR_encoding_vaultRNA_primary_transcript +SO:0002042 Y_RNA_primary_transcript +SO:0002043 miR_encoding_Y_RNA_primary_transcript +SO:0002044 TCS_element +SO:0002045 pheromone_response_element +SO:0002046 FRE +SO:0002047 transcription_pause_site +SO:0002048 disabled_reading_frame +SO:0002049 H3K27_acetylation_site +SO:0002050 constitutive_promoter +SO:0002051 inducible_promoter +SO:0002052 dominant_negative_variant +SO:0002053 gain_of_function_variant +SO:0002054 loss_of_function_variant +SO:0002055 null_mutation +SO:0002056 intronic_splicing_silencer +SO:0002057 intronic_splicing_enhancer +SO:0002058 exonic_splicing_silencer +SO:0002059 recombination_enhancer +SO:0002060 interchomosomal_translocation +SO:0002061 intrachomosomal_translocation +SO:0002062 complex_chromosomal_rearrangement +SO:0002063 alu_insertion +SO:0002064 LINE1_insertion +SO:0002065 SVA_insertion +SO:0005836 regulatory_region +SO:0005837 U14_snoRNA_primary_transcript +SO:0005841 methylation_guide_snoRNA +SO:0005843 rRNA_cleavage_RNA +SO:0005845 exon_of_single_exon_gene +SO:0005847 cassette_array_member +SO:0005848 gene_cassette_member +SO:0005849 gene_subarray_member +SO:0005850 primer_binding_site +SO:0005851 gene_array +SO:0005852 gene_subarray +SO:0005853 gene_cassette +SO:0005854 gene_cassette_array +SO:0005855 gene_group +SO:0005856 selenocysteine_tRNA_primary_transcript +SO:0005857 selenocysteinyl_tRNA +SO:0005858 syntenic_region +SO:0100001 biochemical_region_of_peptide +SO:0100002 molecular_contact_region +SO:0100003 intrinsically_unstructured_polypeptide_region +SO:0100004 catmat_left_handed_three +SO:0100005 catmat_left_handed_four +SO:0100006 catmat_right_handed_three +SO:0100007 catmat_right_handed_four +SO:0100008 alpha_beta_motif +SO:0100009 lipoprotein_signal_peptide +SO:0100010 no_output +SO:0100011 cleaved_peptide_region +SO:0100012 peptide_coil +SO:0100013 hydrophobic_region_of_peptide +SO:0100014 n_terminal_region +SO:0100015 c_terminal_region +SO:0100016 central_hydrophobic_region_of_signal_peptide +SO:0100017 polypeptide_conserved_motif +SO:0100018 polypeptide_binding_motif +SO:0100019 polypeptide_catalytic_motif +SO:0100020 polypeptide_DNA_contact +SO:0100021 polypeptide_conserved_region +SO:1000002 substitution +SO:1000005 complex_substitution +SO:1000008 point_mutation +SO:1000009 transition +SO:1000010 pyrimidine_transition +SO:1000011 C_to_T_transition +SO:1000012 C_to_T_transition_at_pCpG_site +SO:1000013 T_to_C_transition +SO:1000014 purine_transition +SO:1000015 A_to_G_transition +SO:1000016 G_to_A_transition +SO:1000017 transversion +SO:1000018 pyrimidine_to_purine_transversion +SO:1000019 C_to_A_transversion +SO:1000020 C_to_G_transversion +SO:1000021 T_to_A_transversion +SO:1000022 T_to_G_transversion +SO:1000023 purine_to_pyrimidine_transversion +SO:1000024 A_to_C_transversion +SO:1000025 A_to_T_transversion +SO:1000026 G_to_C_transversion +SO:1000027 G_to_T_transversion +SO:1000028 intrachromosomal_mutation +SO:1000029 chromosomal_deletion +SO:1000030 chromosomal_inversion +SO:1000031 interchromosomal_mutation +SO:1000032 indel +SO:1000035 duplication +SO:1000036 inversion +SO:1000037 chromosomal_duplication +SO:1000038 intrachromosomal_duplication +SO:1000039 direct_tandem_duplication +SO:1000040 inverted_tandem_duplication +SO:1000041 intrachromosomal_transposition +SO:1000042 compound_chromosome +SO:1000043 Robertsonian_fusion +SO:1000044 chromosomal_translocation +SO:1000045 ring_chromosome +SO:1000046 pericentric_inversion +SO:1000047 paracentric_inversion +SO:1000048 reciprocal_chromosomal_translocation +SO:1000049 sequence_variation_affecting_transcript +SO:1000050 sequence_variant_causing_no_change_in_transcript +SO:1000054 sequence_variation_affecting_coding_sequence +SO:1000055 sequence_variant_causing_initiator_codon_change_in_transcript +SO:1000056 sequence_variant_causing_amino_acid_coding_codon_change_in_transcript +SO:1000057 sequence_variant_causing_synonymous_codon_change_in_transcript +SO:1000058 sequence_variant_causing_non_synonymous_codon_change_in_transcript +SO:1000059 sequence_variant_causing_missense_codon_change_in_transcript +SO:1000060 sequence_variant_causing_conservative_missense_codon_change_in_transcript +SO:1000061 sequence_variant_causing_nonconservative_missense_codon_change_in_transcript +SO:1000062 sequence_variant_causing_nonsense_codon_change_in_transcript +SO:1000063 sequence_variant_causing_terminator_codon_change_in_transcript +SO:1000064 sequence_variation_affecting_reading_frame +SO:1000065 frameshift_sequence_variation +SO:1000066 sequence_variant_causing_plus_1_frameshift_mutation +SO:1000067 sequence_variant_causing_minus_1_frameshift +SO:1000068 sequence_variant_causing_plus_2_frameshift +SO:1000069 sequence_variant_causing_minus_2_frameshift +SO:1000070 sequence_variant_affecting_transcript_processing +SO:1000071 sequence_variant_affecting_splicing +SO:1000072 sequence_variant_affecting_splice_donor +SO:1000073 sequence_variant_affecting_splice_acceptor +SO:1000074 sequence_variant_causing_cryptic_splice_activation +SO:1000075 sequence_variant_affecting_editing +SO:1000076 sequence_variant_affecting_transcription +SO:1000078 sequence_variant_decreasing_rate_of_transcription +SO:1000079 sequence_variation_affecting_transcript_sequence +SO:1000080 sequence_variant_increasing_rate_of_transcription +SO:1000081 sequence_variant_affecting_rate_of_transcription +SO:1000082 sequence variant_affecting_transcript_stability +SO:1000083 sequence_variant_increasing_transcript_stability +SO:1000084 sequence_variant_decreasing_transcript_stability +SO:1000085 sequence_variation_affecting_level_of_transcript +SO:1000086 sequence_variation_decreasing_level_of_transcript +SO:1000087 sequence_variation_increasing_level_of_transcript +SO:1000088 sequence_variant_affecting_translational_product +SO:1000089 sequence_variant_causing_no_change_of_translational_product +SO:1000092 sequence_variant_causing_complex_change_of_translational_product +SO:1000093 sequence_variant_causing_amino_acid_substitution +SO:1000094 sequence_variant_causing_conservative_amino_acid_substitution +SO:1000095 sequence_variant_causing_nonconservative_amino_acid_substitution +SO:1000096 sequence_variant_causing_amino_acid_insertion +SO:1000097 sequence_variant_causing_amino_acid_deletion +SO:1000098 sequence_variant_causing_polypeptide_truncation +SO:1000099 sequence_variant_causing_polypeptide_elongation +SO:1000100 mutation_causing_polypeptide_N_terminal_elongation +SO:1000101 mutation_causing_polypeptide_C_terminal_elongation +SO:1000102 sequence_variant_affecting_level_of_translational_product +SO:1000103 sequence_variant_decreasing_level_of_translation_product +SO:1000104 sequence_variant_increasing_level_of_translation_product +SO:1000105 sequence_variant_affecting_polypeptide_amino_acid_sequence +SO:1000106 mutation_causing_inframe_polypeptide_N_terminal_elongation +SO:1000107 mutation_causing_out_of_frame_polypeptide_N_terminal_elongation +SO:1000108 mutaton_causing_inframe_polypeptide_C_terminal_elongation +SO:1000109 mutation_causing_out_of_frame_polypeptide_C_terminal_elongation +SO:1000110 frame_restoring_sequence_variant +SO:1000111 sequence_variant_affecting_3D_structure_of_polypeptide +SO:1000112 sequence_variant_causing_no_3D_structural_change +SO:1000115 sequence_variant_causing_complex_3D_structural_change +SO:1000116 sequence_variant_causing_conformational_change +SO:1000117 sequence_variant_affecting_polypeptide_function +SO:1000118 sequence_variant_causing_loss_of_function_of_polypeptide +SO:1000119 sequence_variant_causing_inactive_ligand_binding_site +SO:1000120 sequence_variant_causing_inactive_catalytic_site +SO:1000121 sequence_variant_causing_polypeptide_localization_change +SO:1000122 sequence_variant_causing_polypeptide_post_translational_processing_change +SO:1000123 polypeptide_post_translational_processing_affected +SO:1000124 sequence_variant_causing_partial_loss_of_function_of_polypeptide +SO:1000125 sequence_variant_causing_gain_of_function_of_polypeptide +SO:1000126 sequence_variant_affecting_transcript_secondary_structure +SO:1000127 sequence_variant_causing_compensatory_transcript_secondary_structure_mutation +SO:1000132 sequence_variant_effect +SO:1000134 sequence_variant_causing_polypeptide_fusion +SO:1000136 autosynaptic_chromosome +SO:1000138 homo_compound_chromosome +SO:1000140 hetero_compound_chromosome +SO:1000141 chromosome_fission +SO:1000142 dexstrosynaptic_chromosome +SO:1000143 laevosynaptic_chromosome +SO:1000144 free_duplication +SO:1000145 free_ring_duplication +SO:1000147 deficient_translocation +SO:1000148 inversion_cum_translocation +SO:1000149 bipartite_duplication +SO:1000150 cyclic_translocation +SO:1000151 bipartite_inversion +SO:1000152 uninverted_insertional_duplication +SO:1000153 inverted_insertional_duplication +SO:1000154 insertional_duplication +SO:1000155 interchromosomal_transposition +SO:1000156 inverted_interchromosomal_transposition +SO:1000157 uninverted_interchromosomal_transposition +SO:1000158 inverted_intrachromosomal_transposition +SO:1000159 uninverted_intrachromosomal_transposition +SO:1000160 unoriented_insertional_duplication +SO:1000161 unoriented_interchromosomal_transposition +SO:1000162 unoriented_intrachromosomal_transposition +SO:1000170 uncharacterized_chromosomal_mutation +SO:1000171 deficient_inversion +SO:1000173 tandem_duplication +SO:1000175 partially_characterized_chromosomal_mutation +SO:1000180 sequence_variant_affecting_gene_structure +SO:1000181 sequence_variant_causing_gene_fusion +SO:1000182 chromosome_number_variation +SO:1000183 chromosome_structure_variation +SO:1000184 sequence_variant_causes_exon_loss +SO:1000185 sequence_variant_causes_intron_gain +SO:1000186 sequence_variant_causing_cryptic_splice_donor_activation +SO:1001186 sequence_variant_causing_cryptic_splice_acceptor_activation +SO:1001187 alternatively_spliced_transcript +SO:1001188 encodes_1_polypeptide +SO:1001189 encodes_greater_than_1_polypeptide +SO:1001190 encodes_different_polypeptides_different_stop +SO:1001191 encodes_overlapping_peptides_different_start +SO:1001192 encodes_disjoint_polypeptides +SO:1001193 encodes_overlapping_polypeptides_different_start_and_stop +SO:1001194 alternatively_spliced_gene_encoding_greater_than_1_polypeptide_coding_regions_overlapping +SO:1001195 encodes_overlapping_peptides +SO:1001196 cryptogene +SO:1001197 dicistronic_primary_transcript +SO:1001217 member_of_regulon +SO:1001244 alternatively_spliced_transcript_encoding_greater_than_1_polypeptide_different_start_codon_different_stop_codon_coding_regions_non_overlapping +SO:1001246 CDS_independently_known +SO:1001247 orphan_CDS +SO:1001249 CDS_supported_by_domain_match_data +SO:1001251 CDS_supported_by_sequence_similarity_data +SO:1001254 CDS_predicted +SO:1001255 status_of_coding_sequence +SO:1001259 CDS_supported_by_EST_or_cDNA_data +SO:1001260 internal_Shine_Dalgarno_sequence +SO:1001261 recoded_mRNA +SO:1001262 minus_1_translationally_frameshifted +SO:1001263 plus_1_translationally_frameshifted +SO:1001264 mRNA_recoded_by_translational_bypass +SO:1001265 mRNA_recoded_by_codon_redefinition +SO:1001266 stop_codon_redefinition_as_selenocysteine +SO:1001267 stop_codon_readthrough +SO:1001268 recoding_stimulatory_region +SO:1001269 four_bp_start_codon +SO:1001270 stop_codon_redefinition_as_pyrrolysine +SO:1001271 archaeal_intron +SO:1001272 tRNA_intron +SO:1001273 CTG_start_codon +SO:1001274 SECIS_element +SO:1001275 retron +SO:1001277 three_prime_recoding_site +SO:1001279 three_prime_stem_loop_structure +SO:1001280 five_prime_recoding_site +SO:1001281 flanking_three_prime_quadruplet_recoding_signal +SO:1001282 UAG_stop_codon_signal +SO:1001283 UAA_stop_codon_signal +SO:1001284 regulon +SO:1001285 UGA_stop_codon_signal +SO:1001286 three_prime_repeat_recoding_signal +SO:1001287 distant_three_prime_recoding_signal +SO:1001288 stop_codon_signal +SO:2000061 databank_entry +SO:3000000 gene_segment +SO:3000001 non_coding_exon_variant