From 3d5cdfe7f585978ba566f0e9fd8ed95a3dd07a66 Mon Sep 17 00:00:00 2001 From: Yuanchao Zhang Date: Wed, 30 Jun 2021 13:46:46 -0400 Subject: [PATCH] Update Dockerfile Install mygene for querying gene IDs and symbols from mygene.info. mygene.info seems to be actively maintained. The query results are more comprehensive than [biomaRt](https://bioconductor.org/packages/release/bioc/html/biomaRt.html). Relevant URL: - http://mygene.info/about - https://bioconductor.org/packages/release/bioc/html/mygene.html --- Dockerfile | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index ab3f5dc32d..5e289aee8d 100644 --- a/Dockerfile +++ b/Dockerfile @@ -394,14 +394,18 @@ RUN ./install_bioc.r \ RUN R -e "remotes::install_github('d3b-center/annoFuse',ref = 'c6a2111b5949ca2aae3853f7f34de3d0db4ffa33', dependencies = TRUE)" -# Packages for RNA-seq differential gene expression analysis +# Package for RNA-seq differential gene expression analysis RUN ./install_bioc.r \ DESeq2 -# Packages for remove unwanted variation from RNA-Seq data +# Package for removing unwanted variation from RNA-Seq data RUN ./install_bioc.r \ RUVSeq +# Package for querying gene IDs and symbols +RUN ./install_bioc.r \ + mygene + #### Please install your dependencies immediately above this comment. #### Add a comment to indicate what analysis it is required for