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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file. The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

3.2.0

  • The RFAM_DIR and RFAM_VERSION preferences can now be read from environment variables ENV["JULIA_RFAM_DIR"] and ENV["JULIA_RFAM_VERSION"], if they exist. If the LocalPreferences.toml file is present specifying these values, it takes precedence and the environment variables will be ignored.

3.1.0

  • Added keyword arguments rfam_version and rfam_dir to most functions. These arguments override the values in a preferences file.

3.0.0

Breaking changes

  • New preferences functions, no need to restart Julia after changing a preference. Removed constants RFAM_DIR, RFAM_VERSION.

v2.0.4

  • Add seed_tree.

v2.0.3

  • Fix Rfam.seed typo in filename.

v2.0.2

  • Use https instead of http.

v2.0.1

  • Fix bug in Rfam.cm [d02d6804b85186018f178af4430eb64e35081366].

v2.0.0

  • Allow dir, version options, bypassing LocalPreferences.toml.
  • Changed some names, base_url, version_dir, fasta_dir.

v1.0.0

  • Release v1.0.0.
  • This CHANGELOG file.
  • Functions in the package always return paths to files only. You must parse and load this files.