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contentscript.js
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'use strict';
/*
* Copyright (c) Liang Cai . All rights reserved. Use of this
* source code is governed by a BSD-style license that can be found in the
* LICENSE file.
*
* http://about.me/cail
*
* this started as a UserScript for GreaseMonkey Firefox, http://userscripts.org/scripts/show/97865
*
* the paper link 2.9 (for chrome and edge)
* https://github.com/coronin/thepaperlink-chrome/releases
*/
const DEBUG = false;
let noRun = 0;
const page_d = document;
const page_url = page_d.URL;
const loading_gif = chrome.runtime.getURL('loadingLine.gif');
const clippy_file = chrome.runtime.getURL('clippyIt.png');
let _port = null;
let pmidString = '';
let pmidArray = [];
let old_title = '';
let search_term = '';
let search_result_count = '';
let onePage_calls = 0;
let absNeeded = 0;
let local_mirror = '';
let arbitrary_pause = 3000; // 3s
let f0; let f1; let f2; let f3; let f4; let f5;
// var thePaperLink_chrome_limited = true;
const limited = page_d.createElement('div');
limited.id = 'thePaperLink_chrome_limited';
page_d.body.appendChild(limited); // do not email_pdf
const _doi_on_page = Object.create(null);
const regdoi = /doi\s*:?\s*\d{2}\.\d{4,5}\//i;
const doipattern = /(\d{2}\.\d{4,5}\/[a-zA-Z0-9./)(-]+\w)\s*\W?/;
let jss_base = 'https://www.thepaperlink.com';
let i3t_Sources = [];
if (typeof uneval === 'undefined') {
var uneval = function (a) {
return (JSON.stringify(a)) || '';
};
}
try {
_port = chrome.runtime.connect({ name: 'background_port' });
} catch (err) {
console.log('>> ' + err);
}
function uneval_trim (a) {
const b = uneval(a) || '""';
return b.substr(1, b.length - 2);
}
function byTag (d) { return page_d.getElementsByTagName(d); }
function byID (d) { return page_d.getElementById(d); }
function byClassOne (d) { return page_d.getElementsByClassName(d)[0]; }
function trim (s) { return (s || '').replace(/^\s+|\s+$/g, ''); }
function a_proxy (d) {
_port && _port.postMessage(d);
_port || console.log('>> runtime fail to connect background_port');
}
a_proxy({ load_local_mirror: 1 });
function append_i3t (pmid, S, sec) {
if (S.indexOf(' Actions') > 0) {
S = S.replace(/^\s+/, '').split(' Actions')[0];
}
if (S.indexOf('.') > 0) {
S = S.replace(/\.$/, '');
}
if (i3t_Sources.indexOf(S) === -1) {
i3t_Sources.push(S);
}
setTimeout(function () {
const impact3 = byID('thepaperlink_if' + pmid);
let i3s = page_d.createElement('span');
if (impact3 !== null && impact3.textContent.indexOf(' [Preprint]') > 0) {
impact3.textContent = impact3.textContent.split(' [Preprint]')[0];
i3s.innerHTML = '<span style="background:#e0ecf1;padding:0 1px 0 1px"> preprint</span>';
} else {
i3s.innerHTML = '<span style="background:#e0ecf1;padding:0 1px 0 1px" class="tpl ' + S.toLowerCase() + '"></span>';
}
if (impact3 !== null) {
impact3.style.border = '1px #e0ecf1 solid';
impact3.style.lineHeight = '1';
//if (impact3.className === 'jrnl') { // legacy multi
// impact3.parentNode.prepend(i3s);
impact3.appendChild(i3s);
}
}, sec);
}
function ez_format_link (p, url) {
if (!p) { return url; }
if (p.substr(0, 1) === '.') {
let i; let ss = ''; const s = url.split('/');
for (i = 0; i < s.length; i += 1) {
ss += s[i];
if (i === 2) { ss += p; }
ss += '/';
}
return ss;
} else {
return (p + url);
}
}
function process_scihub () { // 2024 Apr
let i; let len; let ele; let scihub_href;
for (i = 0, len = byTag('button').length; i < len; i += 1) {
ele = byTag('button')[i];
if (ele.getAttribute('onclick') && ele.getAttribute('onclick').indexOf('location.href=') > -1) {
scihub_href = ele.getAttribute('onclick').split('location.href=')[1].substr(1);
if (scihub_href.indexOf('sci-hub.') > 0) {
scihub_href = 'https://' + scihub_href.split('//')[1].split('?')[0];
} else {
scihub_href = 'https://' + page_url.split('/', 3)[2] + scihub_href.split('?')[0];
}
a_proxy({ from_sites_w_doi: [
trim( byID('doi').textContent ),
scihub_href
] });
break;
}
}
}
function process_bioRxiv () { // 2020 Aug, 2021 Mar May
let i; let ii; let len; let lenn; let j; let eles; let elee_name = null; let with_orcid;
// class="paperlink2_found"
const p2span = '<span style="background-color:#e0ecf1;cursor:pointer;padding-left:.2rem;padding-right:.2rem"><span onclick="showPeaks(this)">';
const p2span0 = '<span style="background-color:#e0ecf1;cursor:pointer;padding-right:.2rem"><span onclick="showPeaks(this)">';
const ele = page_d.getElementsByClassName('highwire-cite-authors');
for (ii = 0, lenn = ele.length; ii < lenn; ii += 1) {
eles = ele[ii].getElementsByTagName('span');
if (!eles || eles.length <= 2) {
console.log(len, eles[0].textContent);
const connect_names = eles[0].textContent.split(', ');
let connect_span = '';
for (i = 0, len = connect_names.length; i < len; i += 1) {
j = connect_names[i];
if (j.indexOf(' ') > 0) {
j = j.split(' ');
if (j.length === 3) {
elee_name = j[2] + ' ' + j[0].substr(0, 1) + j[1].substr(0, 1);
} else {
elee_name = j[j.length - 1] + ' ' + j[0].substr(0, 1);
}
} else {
i += 1;
elee_name = j + ' ' + connect_names[i].replaceAll('.', '').replace(' ', '');
}
connect_span += ', ' + p2span + elee_name + '</span></span>';
}
eles[0].innerHTML = connect_span.substr(2);
// 2020-3-20
} else {
len = eles.length;
DEBUG && console.log('process_bioRxiv: found multiple authors', len);
for (i = 2; i < len; i += 1) {
if (eles[i] && eles[i].className.indexOf('nlm-surname') > -1) {
if (eles[i - 1].className.indexOf('nlm-given-names') > -1) {
j = eles[i - 1].textContent;
} else if (eles[i + 1].className.indexOf('nlm-given-names') > -1) {
j = eles[i + 1].textContent;
} else {
continue;
}
if (j.indexOf(' ') > 0) {
j = j.split(' ');
elee_name = eles[i].textContent + ' ' + j[0].substr(0, 1) + j[1].substr(0, 1);
} else if (j.indexOf('-') > 0) {
j = j.split('-');
elee_name = eles[i].textContent + ' ' + j[0].substr(0, 1) + j[1].substr(0, 1).toUpperCase();
} else {
elee_name = eles[i].textContent + ' ' + j.substr(0, 1);
}
}
if (elee_name && eles[i].parentNode.className.indexOf('highwire-citation-author') > -1) {
if (eles[i].parentNode.textContent.indexOf('View ORCID Profile') > -1) {
with_orcid = '<i class="hw-icon-orcid hw-icon-color-orcid"></i>';
} else {
with_orcid = '';
}
if (eles[i].parentNode.className.indexOf(' first') > 0) {
eles[i].parentNode.innerHTML = '<sup>#</sup>' + with_orcid + p2span0 + elee_name + '</span></span>'; // 2021-5-20 ↬
} else {
eles[i].parentNode.innerHTML = ' ' + with_orcid + p2span + elee_name + '</span></span>'; // 2021-5-20 ↬
}
}
elee_name = '';
}
}
}
f0 = setInterval(function () {
if (!byID('thepaperlink_bar') && byClassOne('highwire-cite-metadata')) {
const pub_jnl = byClassOne('highwire-cite-metadata').getElementsByClassName(
'pub_jnl')[0];
if (pub_jnl && pub_jnl.textContent.indexOf(' published in ') > 0) {
page_d.title = pub_jnl.getElementsByTagName('a')[0].textContent;
pub_jnl.id = 'thepaperlink_bar'; // 2021-5-20, 2022-3-23 shown after popup
} else if (pub_jnl) {
f0 && clearInterval(f0);
DEBUG && window.alert(pub_jnl.textContent);
}
}
}, arbitrary_pause); // 2021-4-22 2022-5-19
const insert_style = page_d.createElement('style');
insert_style.type = 'text/css';
insert_style.appendChild(page_d.createTextNode(
'div.qtip100rc3-wrapper{min-width:430px!important}' ));
page_d.body.appendChild(insert_style);
let insert_tip;
eles = byTag('li');
for (ii = 0, lenn = eles.length; ii < lenn; ii += 1) {
if (eles[ii].className === 'author-tooltip-pubmed-link') {
insert_tip = page_d.createElement('span');
insert_tip.innerHTML = '<br>or, click the name highlighted in blue';
eles[ii].appendChild(insert_tip);
}
}
}
function process_storkapp () { // 2018 Dec
let i; let len; let ele; let pmid = ''; let new_href;
// ele.innerHTML = '<span class="paperlink2_found">Vale RD</span>';
for (i = 0, len = byTag('a').length; i < len; i += 1) {
ele = byTag('a')[i];
if (ele.textContent.indexOf('ncbi.nlm.nih.gov/pubmed/') > 0) {
pmid += parseInt(ele.textContent.split('ncbi.nlm.nih.gov/pubmed/')[1], 10);
page_d.title = pmid; // ess.js
a_proxy({ from_sites_w_pmid: pmid });
ele.href = 'https://pubmed.ncbi.nlm.nih.gov/' + pmid + '/';
const elee = page_d.createElement('span');
elee.id = 'thepaperlink_bar';
elee.style.fontSize = '13px';
elee.style.fontWeight = 'normal';
elee.style.marginLeft = '2em';
byTag('h4')[1].appendChild(elee); // Links
break;
}
}
if (pmid !== '') {
for (i = 0, len = byTag('a').length; i < len; i += 1) { // 2020-8-6
ele = byTag('a')[i];
if (ele.href.indexOf('facebook.com/') > 0) {
ele.href = 'https://www.facebook.com/sharer/sharer.php?u=https%3A%2F%2Fwww.thepaperlink.com%2F:' + pmid;
} else if (ele.href.indexOf('twitter.com/') > 0) {
new_href = ele.href.split('www.storkapp.me');
ele.href = new_href[0].replace('status=', 'text=') +
'www.thepaperlink.com%2F:' + pmid + '&hashtags=tpl';
} else if (ele.href.indexOf('weibo.com/share') > 0) { // 2022-3-23
new_href = ele.href.split('&title=');
ele.href = new_href[0].split('?url=')[0] + '?url=' +
'https%3A%2F%2Fwww.thepaperlink.com%2F:' + pmid +
'&title=' + new_href[1];
} else if (ele.href.indexOf('connect.qq.com/') > 0) {
new_href = ele.href.split('&title=');
ele.href = new_href[0].split('?url=')[0] + '?url=' +
'https%3A%2F%2Fwww.thepaperlink.com%2F:' + pmid +
'&title=' + new_href[1];
} else if (ele.href.indexOf('qzone.qq.com/') > 0) {
new_href = ele.href.split('?url=');
ele.href = new_href[0] + '?url=' +
'https%3A%2F%2Fwww.thepaperlink.com%2F:' + pmid;
} else if (ele.href.indexOf('&barcode=1') > 0 ||
ele.href.indexOf('mailto:') === 0 ||
ele.href.indexOf('mp.weixin.qq.com') > 0) {
ele.style.display = 'none';
} else if (ele.href.indexOf('translate.php') > 0) {
ele.parentNode.style.display = 'none';
}
}
if (byID('abstractHolder') !== null) { // 2020-1-10
a_proxy({
pageAbs: trim(byID('abstractHolder').textContent.split('Copyright ')[0]),
pmid: pmid
});
} else { console.log('process_storkapp: #abstractHolder N/A'); }
}
setTimeout(function () {
let a; let b; let i; let l;
for (i = 0, l = byTag('a').length; i < l; i += 1) {
a = byID('relateddiv').getElementsByTagName('a')[i];
if (a && a.href.indexOf('/pubpaper/') > 0) {
b = a.href.split('/pubpaper/');
a.href = 'https://pubmed.ncbi.nlm.nih.gov/' + b[1] + '/';
}
}
}, arbitrary_pause);
}
function process_f1000 () { // 2022 March
let i; let len; let pmid = ''; let doi = '';
const fid = parseInt(page_url.split('.com/article/')[1], 10);
// for (i = 0; i < byTag('meta').length; i += 1) { // not working 2022-3-20
// if (byTag('meta')[i].getAttribute('name') === 'citation_pmid') {
// pmid = byTag('meta')[i].getAttribute('content');
// } else if (byTag('meta')[i].getAttribute('name') === 'citation_doi') {
// doi = byTag('meta')[i].getAttribute('content');
// }
// }
if (fid) {
// console.log(byClassOne('__faculty-opinions-badge__').getElementsByTagName('div')[0]);
setTimeout(function () {
const p_bar = byTag('h1')[0].parentNode.getElementsByTagName('p')[0];
p_bar.id = 'thepaperlink_bar';
p_bar.innerHTML = p_bar.textContent.replace('et al', '<i>et al</i>') +
' ';
for (i = 0, len = byTag('span').length; i < len; i += 1) {
if (trim(byTag('span')[i].textContent).indexOf('PMID:') === 0) {
pmid = trim(byTag('span')[i].textContent).substr(6);
doi = byTag('span')[i].parentNode.getElementsByTagName('a')[0].textContent.split('doi.org/');
if (doi[1]) {
doi = doi[1].substr(0, doi[1].length - 1);
page_d.title = pmid + '::' + doi; // ess.js
} else {
page_d.title = pmid + '::';
}
}
}
const badge_score_div = byTag('aside')[0].getElementsByTagName('h2')[0]; // 2022-5-29
let f_v = '';
if (badge_score_div.getElementsByTagName('span')[0].textContent === 'recommended') {
f_v = trim(badge_score_div.getElementsByTagName('div')[0].textContent);
console.log(arbitrary_pause, pmid, fid, f_v);
a_proxy({ from_f1000: pmid + ',' + fid + ',' + f_v });
} else {
console.log(badge_score_div);
}
if (pmid && byClassOne('css-acwcvw')) { // handle abstract 2022-3-20
a_proxy({
pageAbs: trim(byClassOne('css-acwcvw').textContent.split('Copyright © ')[0]),
pmid: pmid
});
}
}, arbitrary_pause);
}
}
function order_gs () { // 2018 Oct
let i; let len; let tobe = []; let nodes = [];
const lists = byID('_thepaperlink_order_lists').textContent.split(';');
if (byID('_thepaperlink_order_status').textContent === '0') {
if (lists[1] === lists[0]) {
tobe = lists[2].split(',');
byID('_thepaperlink_order_status').textContent = '2';
} else {
tobe = lists[1].split(',');
byID('_thepaperlink_order_status').textContent = '1';
}
} else if (byID('_thepaperlink_order_status').textContent === '1') {
tobe = lists[2].split(',');
byID('_thepaperlink_order_status').textContent = '2';
} else {
tobe = lists[0].split(',');
byID('_thepaperlink_order_status').textContent = '0';
}
byID('gs_res_ccl_mid').style.display = 'none';
for (i = 0, len = tobe.length; i < len; i += 1) {
nodes.push(byID('_thepaperlink_' + tobe[i]));
byID('gs_res_ccl_mid').removeChild(byID('_thepaperlink_' + tobe[i]));
}
for (i = 0, len = nodes.length; i < len; i += 1) {
byID('gs_res_ccl_mid').insertBefore(nodes[i], undefined);
}
nodes = null;
byID('gs_res_ccl_mid').style.display = 'block';
}
function process_googlescholar () { // 2018 Oct
if (!byID('gs_res_ccl_mid')) {
console.log('Cannot find #gs_res_ccl_mid on this page.');
return;
}
let i; let ilen; let tmp; const nodes = byID('gs_res_ccl_mid').childNodes; let a; let b; let c; const d = [];
for (i = 0, ilen = nodes.length; i < ilen; i += 1) {
if (!nodes[i]) { continue; }
a = nodes[i].textContent;
if (!nodes[i].lastChild || !a) { continue; }
if (a.indexOf(' Cited by ') === -1) {
c = 0;
} else {
b = a.split(' Cited by ')[1];
if (b.indexOf('Related article') === -1) {
if (/\d{1,5}\s+All \d/.test(b)) {
c = parseInt(b.split(' ')[0], 10);
} else {
DEBUG && console.log('process_googlescholar', a);
continue;
}
} else {
c = parseInt(b.split('Related article')[0], 10);
}
}
if (c) {
nodes[i].id = '_thepaperlink_' + c;
d.push(c);
} else {
byID('gs_res_ccl_mid').removeChild(nodes[i]);
}
}
if (d.length > 0) {
if (byID('_thepaperlink_cited_order') !== null) {
byID('_thepaperlink_order_lists').textContent = d.join(',') + ';' +
d.sort(function (u, v) { return v - u; }).join(',') + ';' +
d.sort(function (u, v) { return u - v; }).join(',');
} else {
tmp = page_d.createElement('div');
tmp.setAttribute('style', 'float:right;cursor:pointer;color:red');
tmp.innerHTML = ' <span id="_thepaperlink_order_gs">cited order ' +
'<span id="_thepaperlink_order_status">0</span> <span style="background-color:yellow">' +
'(0:original; 1:decreased; 2:increased)</span></span>' +
'<span id="_thepaperlink_order_lists" style="display:none">' +
d.join(',') + ';' +
d.sort(function (u, v) { return v - u; }).join(',') + ';' +
d.sort(function (u, v) { return u - v; }).join(',') + '</span>';
tmp.id = '_thepaperlink_cited_order';
// If compare function is not supplied, elements are sorted by converting them
// to strings and comparing strings in lexicographic order.
byID('gs_ab_md').appendChild(tmp);
byID('_thepaperlink_order_gs').onclick = function () { order_gs(); };
}
}
}
function process_pubmedTrending () {
let i; let ilen; const trending = [];
const nodes = byID('ta_ad_title').parentNode.getElementsByTagName('a');
for (i = 0, ilen = nodes.length; i < ilen; i += 1) {
if (nodes[i].href.indexOf('/trending/') > -1) {
continue;
} else if (nodes[i].href.indexOf('/pubmed/') > -1) {
trending.push(parseInt(nodes[i].href.split('pubmed/')[1], 10));
}
}
if (trending.length > 0) {
a_proxy({ sendID: trending });
} else {
chrome.storage.sync.get(['thepaperlink_apikey'], function (e) {
if (e.thepaperlink_apikey) {
alert_dev(e.thepaperlink_apikey);
}
});
}
}
function parse_id (a) {
const regpmid = /pmid\s*:?\s*(\d+)\s*/i;
const regpmc = /pmcid\s*:?\s*(PMC\d+)\s*/i;
let ID = null;
if (regpmid.test(a)) {
ID = regpmid.exec(a);
} else if (regpmc.test(a)) {
ID = regpmc.exec(a);
ID[1] = ID[1].toUpperCase();
} else if (regdoi.test(a) || doipattern.test(a)) {
ID = doipattern.exec(a);
}
return ID;
}
//function legacy_pubmed (zone, num) {
//}
function LastFirst (s) {
const ss = trim(s.replace('#', '')).split(' ');
let st = ss[ss.length - 1] + ' ';
let si = 0;
for (si; si < ss.length - 1; si += 1) {
st += ss[si][0];
}
return st;
}
function insert_clippy (ID, t_cont, _obj, multi_left = false) {
if (!_obj) {
a_proxy({ t_cont: t_cont }); // 2020-9-22
return;
}
const b = page_d.createElement('div');
if (multi_left === 2) { // new multi1
b.setAttribute('style', 'float:left;z-index:1;cursor:pointer;margin:0.88rem 1.12rem 0 0');
} else if (multi_left === 3) { // new single
b.setAttribute('style', 'float:left;z-index:1;cursor:pointer;margin:1.6rem 1.6rem 0 0');
} else if (multi_left) {
b.setAttribute('style', 'float:left;z-index:1;cursor:pointer;margin-right:1em');
} else {
b.setAttribute('style', 'float:right;z-index:1;cursor:pointer');
}
b.innerHTML = ' <img class="pl4_clippy" title="copy to clipboard" src="' + clippy_file +
'" alt="copy" width="14" height="14" />';
b.id = 'clippy' + ID;
b.onclick = function () { a_proxy({ t_cont: t_cont }); };
_obj.appendChild(b);
}
function grp_author_name (ts) {
const tsLower = ts.toLowerCase();
if (ts.indexOf('. Electronic address:') > -1) { // 32413319
return ts.split('. Electronic address:')[1];
} else if (tsLower.indexOf('working group') > -1 ||
tsLower.indexOf('study group') > -1 ||
tsLower.indexOf('network ') > -1 ||
tsLower.indexOf(' committee') > 0 ||
tsLower.indexOf(' association') > 0 ||
tsLower.indexOf(' team') > 0 ||
tsLower.indexOf(' office') > 0 ||
tsLower.indexOf(' network') > 0 ||
tsLower.indexOf(' collaborative') > 0 ||
tsLower.indexOf(' investigators') > 0 ||
tsLower.indexOf('society of ') > -1 ||
tsLower.indexOf('grou ') > -1 ||
tsLower.indexOf('group of ') > -1) {
return ts;
} else {
return false;
}
}
function new_pubmed_single_More (init_pmid, id_obj, ajax) { // div.id: similar, citedby
let ID; let t_title;
if (pmidString !== '' && pmidString.substr(0, init_pmid.length + 1) !== ',' + init_pmid) {
window.alert(pmidString); // @@@@
}
for (let i = 0, len = id_obj.getElementsByClassName('docsum-pmid').length;
i < len; i += 1) {
try {
ID = id_obj.getElementsByClassName('docsum-pmid')[i].textContent;
if (ID.indexOf('the paper link:') > 0) {
continue;
}
} catch (err) {
DEBUG && console.log('_More docsum-pmid', err);
return;
}
if (byID('tpl' + ID) !== null || byID('thepaperlink_if' + ID) !== null) {
// id_obj.getElementsByClassName('docsum-content')[i].css.opacity = 0.2;
continue;
} else if (pmidString.indexOf(ID) === -1) {
pmidString += ',' + ID;
id_obj.getElementsByClassName('docsum-pmid')[i].id = 'tpl' + ID;
} else {
break; // @@@@
}
t_title = trim(id_obj.getElementsByClassName('docsum-title')[i].textContent);
if (t_title[t_title.length - 1] !== '.') {
t_title += '.';
}
a_proxy({ a_pmid: ID, a_title: t_title }); // queue_scholar_title
const author_obj = id_obj.getElementsByClassName('docsum-authors full-authors')[i];
const authors_str = trim(author_obj.textContent);
const cit_obj = id_obj.getElementsByClassName('docsum-journal-citation full-journal-citation')[i];
const cit_str = trim(cit_obj.textContent).replace(/\s\s+/g, ' ');
let t_cont;
let peakss; let found_click = '<span class="paperlink2_found">'; let peaksss;
if (ajax) {
found_click = '<span class="paperlink2_found" onclick="showPeaks(this)">';
}
if (authors_str.indexOf('No authors listed') > -1 || authors_str === '') {
author_obj.textContent = '[No authors listed]';
} else if (!grp_author_name(authors_str)) { // @@@@
if (authors_str.indexOf(', ') > 0) {
peakss = authors_str.split(', ');
if (peakss[0].length < 25) {
peaksss = found_click + peakss[0] + '</span>, ';
} else {
peaksss = peakss[0] + ', ';
}
if (peakss.length > 3) {
peaksss += '…, ';
} else if (peakss.length === 3 && peakss[1].length < 25) {
peaksss += found_click + peakss[1] + '</span>, ';
} else if (peakss.length === 3 && peakss[1].length > 24) {
peaksss += peakss[1] + ', ';
}
if (peakss[peakss.length - 1].length < 25) {
peaksss += found_click +
peakss[peakss.length - 1].substr(0, peakss[peakss.length - 1].length - 1) +
'</span>.';
} else {
peaksss += peakss[peakss.length - 1];
}
author_obj.innerHTML = peaksss;
} else if (authors_str.length < 25) {
author_obj.innerHTML = found_click + authors_str.substr(0, authors_str.length - 1) +
'</span>.';
} else {
author_obj.textContent = authors_str; // after trim
}
cit_obj.innerHTML = id_journal(cit_str, ID);
}
if (authors_str.indexOf('No authors listed') === -1 && authors_str) {
t_cont = t_title + '\r\n' +
authors_str + '\r\n' +
cit_str;
} else {
t_cont = t_title + '\r\n' + cit_str;
}
if (cit_str.indexOf('Free PMC article.') > 0) {
t_cont = trim(t_cont.split('Free PMC article.')[0]);
}
if (cit_str.indexOf('Review.') > 0) {
t_cont = trim(t_cont.split('Review.')[0]);
}
if (cit_str.indexOf('Online ahead of print.') > 0) {
t_cont = t_cont.replace(' Online ahead of print.', '');
}
insert_clippy(ID, t_cont, id_obj.getElementsByClassName('docsum-authors full-authors')[i]);
}
if (ajax) {
pmidArray = pmidString.substr(1, pmidString.length).split(',');
if (pmidString) {
DEBUG && console.log('pmidString', pmidString);
DEBUG && console.log('pmidArray', pmidArray);
a_proxy({ sendID: pmidArray });
prep_call(pmidString);
} else {
id_obj.getElementsByClassName('show-more')[0].setAttribute('class', 'thepaperlink_Off');
}
}
}
function new_pubmed_single_More_similar () {
if (byID('similar') !== null) {
f1 && clearInterval(f1);
pmidString = '';
new_pubmed_single_More('', byID('similar'), true);
} }
function new_pubmed_single_More_citedby () {
if (byID('citedby') !== null) {
f2 && clearInterval(f2);
pmidString = '';
new_pubmed_single_More('', byID('citedby'), true);
} }
function new_pubmed_references_More (ajax = true) {
if (!byID('references') ||
!byID('references').getElementsByClassName('references-and-notes-list')[0] ) {
return;
}
f3 && clearInterval(f3);
const alldigi = /^\d+$/;
const ols = byID('references').getElementsByClassName('references-and-notes-list');
let links; let obj; let hrefs; let ID;
if (ajax) {
pmidString = '';
}
for (let i = 0, len = ols.length; i < len; i += 1) {
try {
links = ols[i].getElementsByClassName('reference-link');
for (let ii = 0, lenn = links.length; ii < lenn; ii += 1) { // 2024-4-9
obj = links[ii];
if (obj.href.indexOf('pubmed.') > 0) {
break;
}
}
hrefs = obj.href.split('/');
if (hrefs[hrefs.length - 1] === '') {
ID = hrefs[hrefs.length - 2];
} else {
ID = hrefs[hrefs.length - 1];
}
if (!alldigi.test(ID)) {
DEBUG && console.log('Reference, cannot find PMID', ID);
continue;
}
} catch (err) {
DEBUG && console.log('reference-link', err);
// hrefs = ols[i].textContent.split('.');
// if (hrefs.length > 2) {
// obj = page_d.createElement('a');
// obj.textContent = '[link]';
// obj.setAttribute('href', 'https://pubmed.ncbi.nlm.nih.gov/?term=' +
// trim(hrefs[1]).replace(/-/g, ' ') + '[Title]');
// obj.setAttribute('target', '_blank');
// obj.setAttribute('style', 'float:left;padding-right:1em;font-size:11px');
// ols[i].prepend(obj);
// }
continue;
}
if (byID('tpl' + ID) !== null || byID('thepaperlink_if' + ID) !== null) {
// obj.css.opacity = 0.2;
continue;
} else if (pmidString.indexOf(ID) === -1) {
pmidString += ',' + ID;
obj.parentNode.id = 'tpl' + ID;
} else {
break; // @@@@
}
}
if (ajax) {
pmidArray = pmidString.substr(1, pmidString.length).split(',');
if (pmidString) {
DEBUG && console.log('pmidString', pmidString);
DEBUG && console.log('pmidArray', pmidArray);
a_proxy({ sendID: pmidArray });
prep_call(pmidString);
}
}
}
function new_pubmed_single1 (not_first) {
let t_cont; let t_title; let section_obj;
if (!not_first) {
pmidString = '';
const multi_abs_count = page_d.getElementsByClassName('results-article').length;
for (let multi_abs_i = 1; multi_abs_i < multi_abs_count; multi_abs_i += 1) {
new_pubmed_single1(multi_abs_i);
}
}
if (not_first) {
section_obj = page_d.getElementsByClassName('results-article')[not_first];
} else {
section_obj = byClassOne('results-article');
}
const ID = section_obj.getElementsByClassName('current-id')[0].textContent;
if (byID('tpl' + ID) !== null) {
return;
}
pmidString += ',' + ID;
const trigger_obj = section_obj.getElementsByClassName('journal-actions dropdown-block')[0].getElementsByTagName('button')[0];
section_obj.getElementsByClassName('journal-actions dropdown-block')[0].id = 'thepaperlink_if' + ID;
append_i3t(ID, section_obj.getElementsByClassName('journal-actions dropdown-block')[0].textContent, 0);
const tpl_obj = section_obj.getElementsByClassName('identifiers')[0];
tpl_obj.getElementsByClassName('identifier pubmed')[0].id = 'tpl' + ID;
t_title = trim(section_obj.getElementsByTagName('h1')[0].textContent);
if (section_obj.getElementsByClassName('ahead-of-print')[0]) {
section_obj.getElementsByClassName('ahead-of-print')[0].textContent = '';
}
if (t_title[t_title.length - 1] !== '.') {
t_title += '.';
}
try {
a_proxy({ pageAbs: trim(section_obj.getElementsByClassName('abstract-content selected')[0].textContent.replace(/\s\s+/g, ' ')), pmid: ID });
} catch {
window.alert('no abstract for ' + ID);
}
a_proxy({ a_pmid: ID, a_title: t_title }); // queue_scholar_title
const peaks = section_obj.getElementsByClassName('authors-list')[0].getElementsByClassName('authors-list-item');
let peaki; let peakss; let author_multi = '';
for (peaki = 0; peaki < peaks.length; peaki += 1) {
peakss = trim(peaks[peaki].textContent.replace(/\s*\d\s*/g, '')); // affiliations num, removed
if (grp_author_name(peakss)) {
peaks[peaki].textContent = grp_author_name(peakss) + ' ';
author_multi += grp_author_name(peakss) + ' ';
} else if (peakss.indexOf(',') > 0) {
peaks[peaki].innerHTML = '<span class="paperlink2_found">' + LastFirst(peakss.substr(0, peakss.length - 1)) + '</span>, ';
author_multi += peaks[peaki].textContent;
} else {
peaks[peaki].innerHTML = '<span class="paperlink2_found">' + LastFirst(peakss) + '</span>';
author_multi += peaks[peaki].textContent + '.';
}
}
author_multi = author_multi.replace(/[^\x00-\x7F]/g, ''); // 2024-4-2
const ea_obj = section_obj.getElementsByClassName('empty-authors')[0];
const cit_obj = section_obj.getElementsByClassName('cit')[0];
const vip_obj = section_obj.getElementsByClassName('volume-issue-pages')[0];
const time_obj = section_obj.getElementsByTagName('time')[0];
if (ea_obj || !author_multi) {
t_cont = t_title + '\r\n' +
trim(trigger_obj.textContent) + ', ' +
trim((cit_obj || vip_obj).textContent);
} else if (cit_obj) {
t_cont = t_title + '\r\n' + author_multi + '\r\n' +
trim(trigger_obj.textContent) + ', ' +
trim(cit_obj.textContent);
} else if (vip_obj) {
t_cont = t_title + '\r\n' + author_multi + '\r\n' +
trim(trigger_obj.textContent) + ', ' +
trim(vip_obj.textContent) + ' (' +
trim(time_obj.textContent) + '). ';
} else {
t_cont = t_title + '\r\n' + author_multi + '\r\n' +
trim(trigger_obj.textContent) + ' (' +
trim(time_obj.textContent) + '). ';
}
t_cont += ' PMID:' + ID + '\r\n';
DEBUG && console.log('t_cont', t_cont);
// #full-view-identifiers
// .article-citation
insert_clippy(ID, t_cont, section_obj.getElementsByClassName('short-article-details')[0], 3);
const y = page_d.createElement('button');
y.onclick = function () { a_proxy({ t_cont: t_cont }); };
y.innerHTML = '<span class="button-label">Copy</span>';
y.setAttribute('style', 'float:left;border:1px solid #aeb0b5;line-height:1.7rem;font-size:1.6rem;margin:0.5rem 1rem 0 1rem');
section_obj.getElementsByClassName('result-actions-bar')[0].appendChild(y);
const c = page_d.createElement('span');
c.setAttribute('style', 'font-size:11px');
c.innerHTML = '<br><span id="citedBy' + ID + '">...</span>';
tpl_obj.appendChild(c);
}
function new_pubmed_single () {
let t_cont; let t_title;
// ID = byTag('strong')[0].textContent; // 2020-9-16 bug in 32512579
const ID = byClassOne('current-id').textContent;
const trigger_obj = byID('full-view-journal-trigger');
trigger_obj.parentNode.id = 'thepaperlink_if' + ID;
append_i3t(ID, trigger_obj.parentNode.textContent, 0);
const tpl_obj = byID('full-view-identifiers');
tpl_obj.getElementsByClassName('identifier pubmed')[0].id = 'tpl' + ID;
pmidString = ',' + ID; // parse_div will remove the first ch
t_title = trim(byTag('h1')[0].textContent);
if (byClassOne('ahead-of-print')) {
byClassOne('ahead-of-print').textContent = '';
}
if (t_title[t_title.length - 1] !== '.') {
t_title += '.';
}
if (byID('en-abstract') !== null) {
a_proxy({ pageAbs: trim(byID('en-abstract').textContent.replace(/\s\s+/g, ' ')), pmid: ID });
}
a_proxy({ a_pmid: ID, a_title: t_title }); // queue_scholar_title
const peaks = byClassOne('authors-list').getElementsByClassName('authors-list-item');
let peaki; let peakss; let author_multi = '';
for (peaki = 0; peaki < peaks.length; peaki += 1) {
peakss = trim(peaks[peaki].textContent.replace(/\s*\d\s*/g, '')); // affiliations num, removed
if (grp_author_name(peakss)) {
peaks[peaki].textContent = grp_author_name(peakss) + ' ';
author_multi += grp_author_name(peakss) + ' ';
} else if (peakss.indexOf(',') > 0) {
peaks[peaki].innerHTML = '<span class="paperlink2_found">' + LastFirst(peakss.substr(0, peakss.length - 1)) + '</span>, ';
author_multi += peaks[peaki].textContent;
} else {
peaks[peaki].innerHTML = '<span class="paperlink2_found">' + LastFirst(peakss) + '</span>';
author_multi += peaks[peaki].textContent + '.';
}
}
author_multi = author_multi.replace(/[^\x00-\x7F]/g, ''); // 2024-4-2
const ea_obj = byClassOne('empty-authors');
const cit_obj = byClassOne('cit');
const vip_obj = byClassOne('volume-issue-pages');
const time_obj = byTag('time')[0];
if (ea_obj || !author_multi) {
t_cont = t_title + '\r\n' +
trim(trigger_obj.textContent) + ', ' +
trim((cit_obj || vip_obj).textContent);
} else if (cit_obj) {
t_cont = t_title + '\r\n' + author_multi + '\r\n' +
trim(trigger_obj.textContent) + ', ' +
trim(cit_obj.textContent);
} else if (vip_obj) {
t_cont = t_title + '\r\n' + author_multi + '\r\n' +
trim(trigger_obj.textContent) + ', ' +
trim(vip_obj.textContent) + ' (' +
trim(time_obj.textContent) + '). ';
} else {
t_cont = t_title + '\r\n' + author_multi + '\r\n' +
trim(trigger_obj.textContent) + ' (' +
trim(time_obj.textContent) + '). ';
}
t_cont += ' PMID:' + ID + '\r\n';
DEBUG && console.log('t_cont', t_cont);
// #full-view-identifiers
// .article-citation
insert_clippy(ID, t_cont, byClassOne('short-article-details'), 3);
const y = page_d.createElement('button');
y.onclick = function () { a_proxy({ t_cont: t_cont }); };
y.innerHTML = '<span class="button-label">Copy</span>';
y.setAttribute('style', 'float:left;margin:0 1.5rem 0 0');
byClassOne('actions-buttons inline').prepend(y);
const yy = page_d.createElement('div');
yy.className = 'inner-wrap';
yy.onclick = function () { a_proxy({ t_cont: t_cont }); };
yy.innerHTML = '<button style="border-radius:3px;width:141px"><span class="button-label">Copy</span></button>';
byClassOne('actions-buttons sidebar').appendChild(yy);
const c = page_d.createElement('span');
c.setAttribute('style', 'font-size:11px');
c.innerHTML = '<br><span id="citedBy' + ID + '">...</span>';
tpl_obj.appendChild(c);
if (byID('linked-commentary') !== null) {
new_pubmed_single_More(ID, byID('linked-commentary'), false);
}
if (byID('linked-commentary-article') !== null) {
new_pubmed_single_More(ID, byID('linked-commentary-article'), false);
}
if (byID('similar') !== null) {
new_pubmed_single_More(ID, byID('similar'), false);
if (byID('similar').getElementsByClassName('show-more')[0] && !byID('similar_more')) {
byID('similar').getElementsByClassName('show-more')[0].id = 'similar_more';
byID('similar_more').onclick = function () {
f1 = setInterval(new_pubmed_single_More_similar, arbitrary_pause);
};
} // link out to see all similar
}
if (byID('citedby') !== null) {
new_pubmed_single_More(ID, byID('citedby'), false);
if (byID('citedby').getElementsByClassName('show-more')[0] && !byID('citedby_more')) {
byID('citedby').getElementsByClassName('show-more')[0].id = 'citedby_more';
byID('citedby_more').onclick = function () {
f2 = setInterval(new_pubmed_single_More_citedby, arbitrary_pause);
};
} // link out to see all citedby
}
if (byID('references') !== null) {
new_pubmed_references_More(false);
if (byID('references').getElementsByClassName('show-all')[0] && !byID('references_all')) {
byID('references').getElementsByClassName('show-all')[0].id = 'references_all';
byID('references_all').onclick = function () {
byID('tpl_manual_references_all').removeAttribute('class');
f3 = setInterval(new_pubmed_references_More, arbitrary_pause);
};
const z = page_d.createElement('span');
z.innerHTML = ' <img src="' + loading_gif + '" width="16" height="11" alt="loading" />';
z.id = 'tpl_manual_references_all';
z.className = 'thepaperlink_Off';
try {
byID('references').getElementsByTagName('h3')[0].appendChild(z);
} catch {
byID('references').getElementsByTagName('h2')[0].appendChild(z); // 2023-5-28
}
}
// https://pubmed.ncbi.nlm.nih.gov/32598099/
if (byID('references').getElementsByClassName('refs-list-title')[0]) {
byID('references').getElementsByClassName('refs-list-title')[0].style.display = 'none';
}
}
}
function id_journal (s, pmid) {
let sa = trim(s);
let sb = '<span id="thepaperlink_if' + pmid + '">';
if (sa.indexOf('Among authors: ') === 0) { // 2020-4-5
sb = '<span style="display:none">' + sa.substr(0, sa.indexOf('. ') + 2) + '</span>' + sb; // 2022-2-23
sa = sa.substr(sa.indexOf('. ') + 2);
}
if (sa.indexOf('. 20') > 0) {
sb += sa.substr(0, sa.indexOf('. 20')) +
'</span>' + sa.substr(sa.indexOf('. 20') + 1);
append_i3t(pmid, sa.substr(0, sa.indexOf('. 20')), 1);
} else if (sa.indexOf('. 19') > 0 || sa.indexOf('. 18') > 0) {
sb += sa.substr(0, sa.indexOf('. 1')) +
'</span>' + sa.substr(sa.indexOf('. 1') + 1);
append_i3t(pmid, sa.substr(0, sa.indexOf('. 1')), 1);
} else {
console.log(s); // 2021-9-11
if (s.indexOf(' Books & Documents.') === -1) {
window.alert('Book >> ' + s);
}
return s;
}
return sb;
}
function new_pubmed_multi1 (zone, num, ajax = false) {
let ID; let t_cont; let t_title; let not_insert = false;
try {
ID = byTag(zone)[num].getElementsByClassName('docsum-pmid')[0].textContent;
} catch (e) {
DEBUG && console.log(e);
return;
}
// if ( byID('clippy' + ID) ) {
// DEBUG && console.log('exist pmid', ID);
// return;
// }
if (pmidString.indexOf(ID) === -1) {
pmidString += ',' + ID;
try {
byTag(zone)[num].parentNode.nextElementSibling.id = 'tpl' + ID;
} catch (e) {
console.log('New PubMed, not a journal article', ID);
DEBUG && console.log(e);
byTag(zone)[num].id = 'tpl' + ID;
not_insert = true;
}
}
t_title = trim(byTag(zone)[num].parentNode.getElementsByTagName('a')[0].textContent);
if (t_title[t_title.length - 1] !== '.') {
t_title += '.';
}