CWL Viewer v1.2.1

• Adds directory listing functionality
• Better support for packed workflows
  • Use %26 (#) in the URL to view individual workflows as per cwltool
  • Links to subworkflows within a packed file now function correctly
• Improved error reporting
• Fix for array and optional types not being parsed correctly
• Fix for twitter meta tags not containing the correct image URL
• Fix for a concurrency issue
• Brings API documentation up to date with the current state of the JSON API

CWL Viewer v1.2.0

• This release contains no changes - please use v1.2.1 instead

CWL Viewer v1.1.1

This patch release of CWL Viewer fixes documentation and a potential git checkout issue.

CWL Viewer v.1.1.0

This release of the CWL Viewer changes the backend to use cwltool reference implementation with parsing. Deployment now also requires Jena Fuseki as the RDF store.

To update from v1.0 you will need to flush the database with docker-compose rm -v

This work behind this release was done by Mark Robinson, with support from BioExcel, funded by the European Union Horizon 2020 program under grant agreement 675728.

Changelog

• Support for any workflow stored in a Git repository
  • Specific additional features eg linking directly to files for Github, Gitlab, Bitbucket
• Adds cwltool use for parsing - uses RDF representation with triple store
• Intermediate loading screen
• Research Object enhancements
  • Add visualisation images as bundled aggregates
  • RDF representation as annotation
  • Packed version of workflow files as annotation
  • Git2prov link for the repository as history
  • Schema.org support for author attribution in CWL descriptions
• API and documentation backing current features
• Visualisation improvements
  • Intermediate value names
• Ontology information linked and name given for format fields on inputs and outputs
• "About" page with best practices for writing CWL for parsing by the viewer
• Label and description searching on the explore page
• Various bug fixes

Notes: This release breaks private repository access through Github and the viewing of directories to select a workflow within them

References

• https://doi.org/10.7490/f1000research.1114375.1

CWL Viewer v1.0.1

Bug fixes and attribution for The University of Manchester/funding.

CWL Viewer v1.0

Third Year Project Release by @MarkRobbo
School of Computer Science, The University of Manchester

References

• https://doi.org/10.5281/zenodo.823295