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Minor.
Adjusted the screenshot text.
Updated screenshot for creating a Screenshot. Kind of meta...
Added 'gc' column type to description.
Updated figures.
Updated the 'Additional options description'.
Updated to reflect the newest version (prev.09).
Added description about MTJ, native code, etc.
Minor. Added comment that 'Out-of-memory' problem may be mitigated by decreasing the k-mer size.
Minor. Reflecting changes in files that were made to the directory structure.