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Incorrect CIGAR strings in single-stranded GFA output, Assembly.gfa #209

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paoloczi opened this issue Oct 21, 2020 · 2 comments
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Incorrect CIGAR strings in single-stranded GFA output, Assembly.gfa #209

paoloczi opened this issue Oct 21, 2020 · 2 comments
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paoloczi commented Oct 21, 2020 •
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CIGAR strings in the single-stranded GFA output file, Assembly.gfa, are incorrect.

The double-stranded GFA output file, Assembly-BothStrands.gfa, is not affected, and is correct.
@paoloczi paoloczi added the bug Something isn't working label Oct 21, 2020
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This bug is present in Shasta 0.6.0 and previous releases. It is fixed in the latest code and the fix will be available in the next release. To download a current test build containing the fix, follow the directions here.

@paoloczi paoloczi added the fix pushed but not released A fix is in the repository but not yet in a release label Nov 9, 2020
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paoloczi commented Dec 3, 2020

The fix is in Shasta release 0.7.0.

@paoloczi paoloczi removed the fix pushed but not released A fix is in the repository but not yet in a release label Dec 3, 2020
@paoloczi paoloczi closed this as completed Dec 3, 2020
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