From 6b4fbc383447c9f8c5376286900348262f0a12bc Mon Sep 17 00:00:00 2001 From: Christoph Langer Date: Mon, 15 Jun 2020 11:42:23 +0200 Subject: [PATCH] Update readme.md --- readme.md | 18 ++++++++++-------- 1 file changed, 10 insertions(+), 8 deletions(-) diff --git a/readme.md b/readme.md index fcf3474..beb4243 100644 --- a/readme.md +++ b/readme.md @@ -1,14 +1,16 @@ -Wraps OnTAD to work with the cooler ecosystem: -https://github.com/mirnylab/cooler +# OnTAD for coolers +cooler_ontad is a tool that wraps [OnTAD](https://github.com/anlin00007/OnTAD) to work with the [cooler ecosystem]( +https://github.com/mirnylab/cooler). -OnTAD: -https://github.com/anlin00007/OnTAD +## Install with pip: -Use our docker container: -singularity run docker://gerlichlab/mmhic:release-1.1 - -Run to see possible parameters: +## Usage Examples: cooler_ontad --help Run example: cooler_ontad.py testdata/G2.fc_1_2.wOldG2.cis.1000.mcool +## Dockerhub container: +This can be found in our main container docker://gerlichlab/mmhic:release-1.0 + +Run to see possible parameters: +