From 313328a4581b39c8441df95416bcd06a26f69e74 Mon Sep 17 00:00:00 2001 From: Christoph Langer Date: Mon, 15 Jun 2020 12:24:23 +0200 Subject: [PATCH] Update readme.md --- readme.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/readme.md b/readme.md index 6a323f6..4d39f5a 100644 --- a/readme.md +++ b/readme.md @@ -3,7 +3,7 @@ cooler_ontad is a tool that wraps [OnTAD](https://github.com/anlin00007/OnTAD) t https://github.com/mirnylab/cooler). This tool consists of three steps: -- It creates a dense matrix for OnTAD out of a mcooler file, +- It creates a dense matrix for OnTAD out of a .mcooler file, - runs OnTAD, - and creates a .bedpe out of the ONTAD results, all parameters used will be extended to the filename. @@ -13,6 +13,8 @@ pip install ${githubpath} This will set up a command called cooler_ontad in your environment. ## Usage Examples: +Example files can be found on [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE152373). You will need to [zoomify](https://github.com/mirnylab/cooler) .cooler to .mcooler first. + This will show all possible options, the tools support all options of OnTAD: ```cooler_ontad --help```