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environment.yml
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name: nf-core-denovohybrid-1.0dev
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- asn1crypto=0.24.0=py36_1003
- attrs=19.1.0=py36_1
- bandage=0.8.1=hb59a952_0
- bcftools=1.8=h4da6232_3
- biopython=1.73=py36h7b6447c_0
- blas=1.0=mkl
- blast=2.5.0=hc0b0e79_3
- boost=1.67.0=py36_4
- bowtie2=2.3.4.1=py36h2d50403_1
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2019.6.16=hecc5488_0
- certifi=2019.6.16=py36_1
- cffi=1.12.3=py36h8022711_0
- chardet=3.0.4=py36_1003
- circos=0.69.8=0
- click=7.0=py_0
- colormath=3.0.0=py_2
- cryptography=2.7=py36h72c5cf5_0
- curl=7.65.2=hbc83047_0
- cycler=0.10.0=py36_0
- dbus=1.13.6=h746ee38_0
- decorator=4.4.0=py_0
- expat=2.2.6=he6710b0_0
- fastqc=0.11.8=1
- filtlong=0.2.0=he941832_2
- font-ttf-dejavu-sans-mono=2.37=h6964260_0
- fontconfig=2.13.0=h9420a91_0
- freebayes=0.9.21.7=0
- freetype=2.9.1=h8a8886c_1
- future=0.17.1=py36_1000
- giflib=5.1.4=h14c3975_1
- glib=2.56.2=hd408876_0
- glimmerhmm=3.0.4=pl526hf484d3e_3
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- htslib=1.9=h4da6232_3
- icu=58.2=h9c2bf20_1
- idna=2.8=py36_1000
- intel-openmp=2019.4=243
- ipython_genutils=0.2.0=py36_0
- jinja2=2.10.1=py_0
- joblib=0.13.2=py36_0
- jpeg=9b=h024ee3a_2
- jsonschema=3.0.1=py36_0
- jupyter_core=4.5.0=py_0
- kiwisolver=1.1.0=py36he6710b0_0
- krb5=1.16.1=h173b8e3_7
- libboost=1.67.0=h46d08c1_4
- libcurl=7.65.2=h20c2e04_0
- libdeflate=1.2=h14c3975_0
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.1.0=hdf63c60_0
- libgd=2.2.5=hceca4fd_3
- libgfortran-ng=7.3.0=hdf63c60_0
- libpng=1.6.37=hbc83047_0
- libssh2=1.8.2=h1ba5d50_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.0.10=h2733197_2
- libuuid=1.0.3=h1bed415_2
- libwebp=1.0.1=h8e7db2f_0
- libxcb=1.13=h1bed415_1
- libxml2=2.9.9=hea5a465_1
- lzstring=1.0.4=py_1001
- markdown=3.1.1=py_0
- markupsafe=1.1.1=py36h14c3975_0
- matplotlib=3.0.3=py36h5429711_0
- miniasm=0.3_r179=ha92aebf_0
- minimap2=2.17=h84994c4_0
- mkl=2019.4=243
- mkl_fft=1.0.12=py36ha843d7b_0
- mkl_random=1.0.2=py36hd81dba3_0
- multiqc=1.7=py_4
- nanoget=1.8.0=py_1
- nanomath=0.23.1=py36_0
- nanoplot=1.26.2=py_0
- nanoplotter=1.8.0=py36_0
- nbformat=4.4.0=py36_0
- ncurses=6.1=he6710b0_1
- networkx=2.3=py_0
- ngs-bits=2019_04=h89e63da_0
- numpy=1.16.4=py36h7e9f1db_0
- numpy-base=1.16.4=py36hde5b4d6_0
- openjdk=8.0.152=h46b5887_1
- openssl=1.1.1c=h7b6447c_1
- pandas=0.24.2=py36he6710b0_0
- patsy=0.5.1=py36_0
- pauvre=0.1.86=py_1
- pcre=8.43=he6710b0_0
- perl=5.26.2=h14c3975_0
- perl-autoloader=5.74=pl526_2
- perl-carp=1.38=pl526_3
- perl-clone=0.41=pl526h14c3975_1
- perl-config-general=2.63=pl526_0
- perl-digest-perl-md5=1.9=pl526_1
- perl-dynaloader=1.25=pl526_1
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-font-ttf=1.06=pl526_0
- perl-gd=2.71=pl526he860b03_0
- perl-io-string=1.08=pl526_3
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-math-bezier=0.01=pl526_1
- perl-math-round=0.07=pl526_1
- perl-math-vecstat=0.08=pl526_1
- perl-module-implementation=0.09=pl526_2
- perl-module-runtime=0.016=pl526_1
- perl-number-format=1.75=pl526_3
- perl-params-validate=1.29=pl526h14c3975_1
- perl-pathtools=3.75=pl526h14c3975_1
- perl-readonly=2.05=pl526_0
- perl-regexp-common=2017060201=pl526_0
- perl-scalar-list-utils=1.50=pl526h14c3975_0
- perl-set-intspan=1.19=pl526_1
- perl-statistics-basic=1.6611=pl526_2
- perl-svg=2.84=pl526_0
- perl-text-format=0.59=pl526_2
- perl-time-hires=1.9760=pl526h14c3975_1
- perl-try-tiny=0.30=pl526_1
- perl-xml-parser=2.44=pl526h4e0c4b3_7
- perl-xsloader=0.24=pl526_0
- pilon=1.23=0
- pip=19.1.1=py36_0
- plotly=3.10.0=py_0
- porechop=0.2.3_seqan2.1.1=py36h2d50403_3
- py-boost=1.67.0=py36h04863e7_4
- pycparser=2.19=py36_1
- pyopenssl=19.0.0=py36_0
- pyparsing=2.4.0=py_0
- pyqt=5.9.2=py36h05f1152_2
- pyrsistent=0.14.11=py36h7b6447c_0
- pysam=0.11.2.2=py36_1
- pysocks=1.7.0=py36_0
- python=3.6.8=h0371630_0
- python-dateutil=2.8.0=py36_0
- pytz=2019.1=py_0
- pyyaml=5.1.1=py36h516909a_0
- qt=5.9.7=h5867ecd_1
- quast=5.0.2=py36pl526ha92aebf_0
- r=3.5.0=r350_0
- r-markdown=0.8=r350hb353451_0
- racon=1.4.0=he860b03_0
- readline=7.0=h7b6447c_5
- requests=2.22.0=py36_1
- retrying=1.3.3=py36_2
- samtools=1.6=he673b24_3
- scipy=1.2.1=py36h7c811a0_0
- seaborn=0.9.0=py36_0
- seqtk=1.3=h84994c4_1
- setuptools=41.0.1=py36_0
- simplejson=3.8.1=py36_0
- sip=4.19.8=py36hf484d3e_0
- six=1.12.0=py36_0
- spades=3.13.1=0
- spectra=0.0.11=py_1
- sqlite=3.29.0=h7b6447c_0
- statsmodels=0.10.0=py36hdd07704_0
- tbb=2019.4=hfd86e86_0
- tk=8.6.8=hbc83047_0
- tornado=6.0.3=py36h7b6447c_0
- traitlets=4.3.2=py36_0
- unicycler=0.4.7=py36hdbcaa40_0
- urllib3=1.25.3=py36_0
- wheel=0.33.4=py36_0
- wtdbg=2.3=ha92aebf_0
- xz=5.2.4=h14c3975_4
- yaml=0.1.7=h14c3975_1001
- zlib=1.2.11=h7b6447c_3
- zstd=1.3.7=h0b5b093_0