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index.html
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---
title: ImageJ
layout: home
---
<!-- Header -->
<section id="header">
<div class="inner">
<h1>
<span class="avoidwrap">Welcome to the</span>
<span class="avoidwrap"><strong>ImageJ</strong> ecosystem</span>
</h1>
<h2>
<span class="avoidwrap">ImageJ is <a href="/licensing/open-source">open‑source</a> image processing software</span>
<span class="avoidwrap">designed for scientific multidimensional images.</span>
</h2>
<div class="disambig">
<h2>There are two main flavors of ImageJ</h2>
<table class="center">
<tr>
<td class="imagej1">
<a href="/software/imagej1">
<img src="/media/icons/imagej1.png" alt="ImageJ1 Logo">
<br>ImageJ1</a>
</td>
<td class="imagej2">
<a href="/software/imagej2">
<img src="/media/icons/imagej-shadow.png" alt="ImageJ2 Logo">
<br>ImageJ2</a>
</td>
</tr>
</table>
<p class="caption">
This <a href="/editing">wiki</a> is a knowledge base
covering both <a href="/software/imagej">flavors</a>,<br>
their <a href="/list-of-extensions">extensions</a>,
and <a href="/software">related software projects</a>.</p>
</div>
<ul class="actions special">
<li><a href="#resources" class="button scrolly">Get Started</a></li>
</ul>
</div>
</section>
<!-- Calls to Action -->
<section id="resources" class="main style3 special">
<header class="minor">
<table><tbody><tr>
<td>Users ▼</td>
<td class="dots"></td>
<td>▼ Developers</td>
</tr></tbody></table>
</header>
<ul class="userdev actions special">
<li><a href="/downloads" class="button solid icon"><span class="fas fa-download"></span> Download</a></li>
<li><a href="/learn" class="button icon solid"><span class="fas fa-graduation-cap"></span> Learn</a></li>
<li><a href="/plugins" class="button icon solid"><span class="fas fa-wrench"></span> Extend</a></li>
<li><a href="/scripting" class="button icon solid"><span class="fas fa-industry"></span> Automate</a></li>
<li><a href="/develop" class="button icon solid"> <span class="fas fa-terminal"></span> Develop</a></li>
</ul>
<ul class="community actions special">
<li><a href="/contribute/citing" class="button icon solid"><span class="fas fa-quote-left"></span> Cite</a></li>
<li><a href="/discuss" class="button icon solid"><img src="/media/icons/image-sc.png" width="24" style="vertical-align: middle; margin-top: -5px"> Discuss</a></li>
<li><a href="/contribute" class="button icon solid"><span class="fas fa-hard-hat"></span> Contribute</a></li>
</ul>
<header class="minor"> ▲ Community ▲ </header>
</section>
<div style="clear: both"></div>
<!-- ImageJ Introduction -->
<section id="one" class="main">
<div class="container">
<div class="row gtr-150">
<div class="col-12 col-12-medium">
<header class="major">
<h1>Why ImageJ?</h1>
<header class="container-whyij">
<div class="row-whyij">
<div class="col-4">
<div class="fa-5x text-success">
<span class="fas fa-bolt"></span>
</div>
<h2>Powerful</h2>
<p>
ImageJ facilitates image analysis techniques including
<a href="/imaging/image-intensity-processing">image processing</a>,
<a href="/imaging/colocalization-analysis">colocalization</a>,
<a href="/imaging/deconvolution">deconvolution</a>,
<a href="/imaging/registration">registration</a>,
<a href="/imaging/segmentation">segmentation</a>,
<a href="/imaging/tracking">tracking</a>,
<a href="/imaging/visualization">visualization</a>,
and much more.
</p>
</div>
<div class="col-4">
<div class=" fa-5x text-primary">
<span class="fas fa-cogs"></span>
</div>
<h2>Extensible</h2>
<p>
ImageJ offers robust extensibility, harnessing the power of
hundreds of plugins to assist with any of your imaging needs.
</p>
</div>
<div class="col-4">
<div class=" fa-5x text-danger">
<span class="fas fa-heart"></span>
</div>
<h2>Free & Open Source</h2>
<p>
ImageJ is an <a href="/licensing/open-source">open source</a>
project hosted on
<a href="https://github.com/imagej">GitHub</a>,
developed by and for the scientific imaging community.
</p>
</div>
</div>
</header>
</header>
</div>
</div>
</div>
</section>
<div class="col-md-8">
<div class="card text-center">
<div class="card-header">
<ul class="nav nav-tabs card-header-tabs" id="plugin-tabs" role="tablist">
<!-- dynamically generated from plugins.json -->
</ul>
</div>
<div class="card-body">
<div class="tab-content" id="plugin-tab-content">
<!-- dynamically generated from plugins.json -->
</div>
</div>
</div>
</div>
<!-- Spotlight -->
<!-- Bootstrap core JavaScript
================================================== -->
<!-- Placed at the end of the document so the pages load faster -->
<script src="/assets/js/jquery-3.4.1.min.js"></script>
<script>
let first = true;
const MAX_PLUGIN_COUNT = 6; // controls max number of tabs shown
$.getJSON("/plugins.json", function(json) {
let plugins = json.plugins;
// Fisher-Yates shuffle; see: https://javascript.info/task/shuffle
for (let i = plugins.length - 1; i > 0; i--) {
let j = Math.floor(Math.random() * (i + 1)); // random index from 0 to i
[plugins[i], plugins[j]] = [plugins[j], plugins[i]]; // swap elements
}
if (plugins.length > MAX_PLUGIN_COUNT){
plugins = plugins.slice(0,MAX_PLUGIN_COUNT);
}
plugins.map(function(val){
// generating the tab header
let nameSlug = 'plugin-' + slugify(val.name);
let tabString = `
<li class="nav-item">
<a class="nav-link ${first ? 'active' : ''}" id="${nameSlug}-tab-header" data-toggle="tab" href="#${nameSlug}-tab" role="tab" aria-controls="${nameSlug}" aria-selected="true">${val.name}</a>
</li>
`
// generating the tab panel
let paneString = `
<div class="tab-pane fade ${first ? 'show active' : ''}" id="${nameSlug}-tab" role="tabpanel" aria-labelledby="${nameSlug}-tab-header">
${val.imgUrl ?
'<img class="img-fluid img-plugin" alt="image showing ' + val.name + ' in action" src = "' + val.imgUrl + '" /> <hr />'
: ''
}
<h5 class="card-title">${val.name}</h5>
<p class="card-text">${val.description}</p>
<a href="${val.link}" class="btn btn-primary">More information</a>
</div>
`
$("#plugin-tabs").append(tabString);
$("#plugin-tab-content").append(paneString);
if (first){
first = false;
}
})
});
</script>