v5.4.6

🧬 Features

• RFC69 : survival chart with landmark events and hazard ratio @TJMKuijpers (#4740)
• match cna chart colors with oncoprint and adjust label colors according to slice brightness @h164654156465 (#4750)

🎨 Style Tweaks

• Genie portal timeline: tweak track ordering for assessment tracks @alisman (#4754)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.5...v5.4.6
• Frontend: v5.4.5...v5.4.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.5

🐛 Bug Fixes

• Fix search issue in SV table when site1 gene is missing @alisman (#4752)
• Patient page: fix Clinical Events table search (handle numerical data) @alisman (#4751)

👷‍♀️ Testing, Configuration & Deployment

• Configure left logo in the cBioPortal header via 'skin.left_logo' property @pvannierop (#4747)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.4...v5.4.5
• Frontend: v5.4.4...v5.4.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.4

🧬 Features

• Enable Results View Structural Variants Tab @inodb (#4745)

✨ Enhancements

• On patient page, default to SBS mutational signatures @alisman (#4748)

🐛 Bug Fixes

• StudyView: in manual submit mode, prevent user from clearing with UI @alisman (#4738)
• Resolve fetching genomic chart datatype for logged in user @kalletlak (#4742)

🎨 Style Tweaks

• Update home page citation @dippindots (#4741)

👷‍♀️ Testing, Configuration & Deployment

• [RFC68] Enable Struct Var table feature on Study View with 'skin.study_view.show_sv_table' property @pvannierop (#4744)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.3...v5.4.4
• Frontend: v5.4.3...v5.4.4

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.3

✨ Enhancements

• [RFC 76] Redesign oncoprint annotation menu @BasLee (#4709)

🐛 Bug Fixes

• Fix SV pane search box: Only filter genes when present @BasLee (#4711)

🎨 Style Tweaks

• Remove revue from Annotation column sorting @leexgh (#4739)

📐 Prototype (Internal Use)

• (GSoC) Generic Assay Categorical/Binary data implementation Frontend @Djokovic0311 (#4686)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.2...v5.4.3
• Frontend: v5.4.2...v5.4.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.2

🐛 Bug Fixes

• search returns false for bad regex @jfkonecn (#4719)

👷‍♀️ Testing, Configuration & Deployment

• Update google analytics implementation @alisman (#4718)

🧰 Maintenance

• Update yarn lock file @dippindots (#4722)
• Bump semver from 5.6.0 to 5.7.2 @dependabot (#4664)
• Bump word-wrap from 1.2.3 to 1.2.4 @dependabot (#4668)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.1...v5.4.2
• Frontend: v5.4.1...v5.4.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.1

🧬 Features

• Discrete molecular data counts @h164654156465 (#4706)

✨ Enhancements

• Add property to define custom sample type colors in patient view @BasLee (#4704)
• Improve non-profiled gene panel links in oncoprint tooltip @BasLee (#4701)
• Fix hidden non-genomic data when excluding VUS in oncoprint @BasLee (#4712)
• Extend sample type colors in patient view @BasLee (#4679)

🏎 Performance Tweaks

• Significantly reduce loading time for mutations table in comparison page @gblaih (#4714)

👷‍♀️ Testing, Configuration & Deployment

• Update API clients and fix screenshots after Oncobk update @alisman (#4715)
• Add e2e tests for Interactive Web Tour @Beking0912 (#4700)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.0...v5.4.1
• Frontend: v5.4.0...v5.4.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.0

✨ Enhancements

• Enhancements to patient page @kalletlak (#4695)

👷‍♀️ Testing, Configuration & Deployment

• Update mysql 8 connection string for localdb tests @dippindots (#4710)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.19...v5.4.0
• Frontend: v5.3.19...v5.4.0

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.19

🧬 Features

• Add Interactive Web Tour for Virtual Studies and Group Comparison @Beking0912 (#4687)

🐛 Bug Fixes

• Replace twitter with news feed @alisman (#4685)

👷‍♀️ Testing, Configuration & Deployment

• Fix e2e tests that use study view charts button @gblaih (#4698)
• update screenshots after addition of ancestry data @alisman (#4697)
• Update jitpack-build for pre-release @dippindots (#4696)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.18...v5.3.19
• Frontend: v5.3.18...v5.3.19

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.18

🐛 Bug Fixes

• Fix pathway table page reset issue @gorkemsolun (#4678)
• bug fix: case no meta data from mutational signatures endpoint @TJMKuijpers (#4692)
• Fix mutated and total profiled patient counts in comparison mutations table and lollipop tooltip @gblaih (#4691)

👷‍♀️ Testing, Configuration & Deployment

• Adding jitpack build script and label check test for pull request @dippindots (#4688)
• Add defaults for mutation heatmap and line chart checkboxes @BasLee (#4680 #4694)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.17...v5.3.18
• Frontend: v5.3.17...v5.3.18

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.17

✨ Enhancements

• Update q value banner language and placement @alisman (#4683)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots @alisman (#4684)
• Fix color chooser e2e test after update to group pill style @alisman (#4681)

🧰 Maintenance

• Add a banner announcing introduction of two-sided exact test @alisman (#4682)
• Update pathway mapper version to 2.3.0 @onursumer (#4631)

📐 Prototype (Internal Use)

• RFC68: Impl. structural variants table in Study View @pvannierop (#4577)
• Feature to visualize mutational counts for mutational signatures @TJMKuijpers (#4540)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.16...v5.3.17
• Frontend: v5.3.16...v5.3.17

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning