macOS install

[BenjaminDEMAILLE]

Hi ! How can install on macOS with python3.
After install it's still looking for python instead of python3

benjamin@MacBook-Pro-de-Benjamin ~ % /opt/homebrew/bin/gatk/build/resources/main/gatk
env: python: No such file or directory

How can I solve it ? or is it possible for you to refer to python as python3?

[lbergelson]

There are a few options. You can always just download the zip file from our releases page, unzip it and hopefully things just work. I think it will probably have the same issue though.

I would probably recommend adding a symlink to your system that redirects python -> python3. The other option is to just open up the gatk launch script (it's just called gatk) in a text editor and change the shebang at the top from

#!/usr/bin/env python
to
#!/usr/bin/env python3