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Spark-ify RevertSam #4461

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LeeTL1220 opened this issue Feb 26, 2018 · 1 comment
Closed

Spark-ify RevertSam #4461

LeeTL1220 opened this issue Feb 26, 2018 · 1 comment
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@jamesemery
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enhancement Spark tools
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Engine-Q42018

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@LeeTL1220
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RevertSam is an easy tool to parallelize and it is very slow. Can we make it a Spark tool?

There is going to be more demand to convert bams from hg19 to hg38 and RevertSam is part of that process.
@lbergelson
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That seems very doable.

@jamesemery jamesemery self-assigned this Aug 16, 2018
@droazen droazen added this to the Engine-Q42018 milestone Oct 4, 2018
@droazen droazen added the tools label Oct 4, 2018
@jamesemery jamesemery mentioned this issue Oct 17, 2018
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@jamesemery jamesemery mentioned this issue Nov 7, 2018
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enhancement Spark tools
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@droazen @LeeTL1220 @lbergelson @jamesemery