diff --git a/Dockerfile b/Dockerfile index 1296345ef4f..2f666c2802f 100644 --- a/Dockerfile +++ b/Dockerfile @@ -89,7 +89,8 @@ ENV CLASSPATH /gatk/gatk.jar:$CLASSPATH WORKDIR /gatk ENV PATH $CONDA_PATH/envs/gatk/bin:$CONDA_PATH/bin:$PATH -RUN conda env create -n gatk -f /gatk/gatkcondaenv.yml && \ +RUN conda install -c conda-forge mamba=1.5.3 +RUN mamba create -n gatk --file /gatk/gatkcondaenv.yml && \ echo "source activate gatk" >> /gatk/gatkenv.rc && \ echo "source /gatk/gatk-completion.sh" >> /gatk/gatkenv.rc && \ conda clean -afy && \