From 3beb95c066c0e5a3beca25c1d8c82dd4e39df307 Mon Sep 17 00:00:00 2001 From: Dror Kessler Date: Mon, 6 May 2024 13:11:43 +0300 Subject: [PATCH] Update FlowFeatureMapper.java --- .../tools/walkers/featuremapping/FlowFeatureMapper.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/featuremapping/FlowFeatureMapper.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/featuremapping/FlowFeatureMapper.java index 949b4e76e29..98f62eb63a3 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/featuremapping/FlowFeatureMapper.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/featuremapping/FlowFeatureMapper.java @@ -337,7 +337,7 @@ public VCFHeader makeVCFHeader(final SAMSequenceDictionary sequenceDictionary, f headerInfo.add(new VCFInfoHeaderLine(VCF_MAPQ, 1, VCFHeaderLineType.Integer, "Read mapqe")); headerInfo.add(new VCFInfoHeaderLine(VCF_CIGAR, 1, VCFHeaderLineType.String, "Read CIGAR")); headerInfo.add(new VCFInfoHeaderLine(VCF_READ_COUNT, 1, VCFHeaderLineType.Integer, "Number of reads containing this location")); - headerInfo.add(new VCFInfoHeaderLine(VCF_FILTERED_COUNT, 1, VCFHeaderLineType.Integer, "Number of reads containing this location that agree with reference according and pass the adjacent base filter")); + headerInfo.add(new VCFInfoHeaderLine(VCF_FILTERED_COUNT, 1, VCFHeaderLineType.Integer, "Number of reads containing this location that agree with reference and pass the adjacent base filter")); headerInfo.add(new VCFInfoHeaderLine(VCF_FC1, 1, VCFHeaderLineType.Integer, "Number of M bases different on read from references")); headerInfo.add(new VCFInfoHeaderLine(VCF_FC2, 1, VCFHeaderLineType.Integer, "Number of features before score threshold filter")); headerInfo.add(new VCFInfoHeaderLine(VCF_LENGTH, 1, VCFHeaderLineType.Integer, "Read length"));