diff --git a/README.md b/README.md index bfa6beb..56fe798 100644 --- a/README.md +++ b/README.md @@ -205,7 +205,7 @@ Problem? Suggestion? Technical errors and user support requests can be filed on If you use `fondue` in your research, please cite the following: Michal Ziemski, Anja Adamov, Lina Kim, Lena Flörl, Nicholas A. Bokulich. 2022. Reproducible acquisition, management, and meta-analysis of nucleotide sequence (meta)data using q2-fondue. -bioRxiv 2022.03.22.485322; doi: https://doi.org/10.1101/2022.03.22.485322 +_Bioinformatics; doi: https://doi.org/10.1093/bioinformatics/btac639 ## License diff --git a/q2_fondue/citations.bib b/q2_fondue/citations.bib index 878faae..a46e222 100644 --- a/q2_fondue/citations.bib +++ b/q2_fondue/citations.bib @@ -1,44 +1,46 @@ @article {Ziemski2022, - author = {Ziemski, Michal and Adamov, Anja and Kim, Lina and Fl{\"o}rl, Lena and Bokulich, Nicholas A.}, + author = {Ziemski, Michal and Adamov, Anja and Kim, Lina and Flörl, Lena and Bokulich, Nicholas A}, title = {Reproducible acquisition, management, and meta-analysis of nucleotide sequence (meta)data using q2-fondue}, year = {2022}, - doi = {10.1101/2022.03.22.485322}, - URL = {https://www.biorxiv.org/content/early/2022/03/25/2022.03.22.485322}, - journal = {bioRxiv} + month = {09}, + doi = {10.1093/bioinformatics/btac639}, + URL = {https://doi.org/10.1093/bioinformatics/btac639}, + journal = {Bioinformatics}, + issn = {1367-4803}, } @article{Buchmann2019, - author = {Buchmann, Jan P and Holmes, Edward C}, - doi = {10.1093/bioinformatics/btz385}, - editor = {Wren, Jonathan}, - journal = {Bioinformatics}, - month = {nov}, - number = {21}, - pages = {4511--4514}, - publisher = {Oxford University Press}, - title = {Entrezpy: a Python library to dynamically interact with the NCBI Entrez databases}, - url = {https://academic.oup.com/bioinformatics/article/35/21/4511/5488119}, - volume = {35}, - year = {2019} + author = {Buchmann, Jan P and Holmes, Edward C}, + doi = {10.1093/bioinformatics/btz385}, + editor = {Wren, Jonathan}, + journal = {Bioinformatics}, + month = {nov}, + number = {21}, + pages = {4511--4514}, + publisher = {Oxford University Press}, + title = {Entrezpy: a Python library to dynamically interact with the NCBI Entrez databases}, + url = {https://academic.oup.com/bioinformatics/article/35/21/4511/5488119}, + volume = {35}, + year = {2019} } @misc{SraToolkit, - name = {SRA Toolkit}, - author = {SRA Toolkit Development Team}, - version = {2.9.6}, - url = {https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software} + name = {SRA Toolkit}, + author = {SRA Toolkit Development Team}, + version = {2.9.6}, + url = {https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software} } @misc{stephan_hugel_2019_2917290, - author = {Stephan Hügel and Peter Gerdes and Patrick Fournier and + author = {Stephan Hügel and Peter Gerdes and Patrick Fournier and emuzie and Patrick Golden and jghauser and Stefan Frühwirth and Sean Takats and Pablo Orduña and Merlin and Erik Hetzner and Christian Brodbeck and Avram Lyon and A Lee}, - title = {urschrei/pyzotero: Zenodo Release}, - month = {may}, - year = 2019, - publisher = {Zenodo}, - version = {v1.3.15}, - doi = {10.5281/zenodo.2917290}, - url = {https://doi.org/10.5281/zenodo.2917290} + title = {urschrei/pyzotero: Zenodo Release}, + month = {may}, + year = 2019, + publisher = {Zenodo}, + version = {v1.3.15}, + doi = {10.5281/zenodo.2917290}, + url = {https://doi.org/10.5281/zenodo.2917290} }