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MAINT: move partitioning and collating actions to q2-types #172

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misialq opened this issue May 23, 2024 · 1 comment
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MAINT: move partitioning and collating actions to q2-types #172

misialq opened this issue May 23, 2024 · 1 comment
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enhancement New feature or request

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@misialq
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misialq commented May 23, 2024

Is your feature request related to a problem? Please describe.
Some plugins (e.g. q2-amr) use partitioning and/or collating actions contained in q2-moshpit to facilitate parallelization of their respective actions. This introduces a dependency on q2-moshpit and can sometimes lead to dependency issues. We should move those actions to q2-types as every plugin needs it anyway and it would simplify dependency resolution. Those actions are also directly linked to some types/formats so q2-types seems like a good place for those actions to live.

Describe the solution you'd like
Move all the code for partitioning/collating actions to q2-types. This will require adjusting all the actions (here and everywhere else) which use the actions being moved.

@misialq
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misialq commented Nov 7, 2024

Closed by qiime2/q2-types#334

@misialq misialq closed this as completed Nov 7, 2024
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