site.config.json

{
  "site_name": "BioImage.IO",
  "site_icon": "🦒",
  "site_logo": "/static/img/bioimage-io-logo-white.svg",
  "author": "BioImage.IO Team",
  "keywords": "Bioimaging, AI, deep learning, image processing",
  "description": "BioImage.IO -- an AI model repository for deep learning.",
  "twitter_site": "@bioimageio",
  "twitter_creator": "@weioyang",
  "twitter_image": "https://bioimage.io/static/img/bioimage-io-banner.png",
  "og_url": "https://bioimage.io",
  "og_title": "BioImage.IO",
  "og_image": "https://bioimage.io/static/img/bioimage-io-banner.png",
  "og_description": "Advanced AI models in one-click",
  "background_image": "static/img/zoo-background.svg",
  "manifest_url": "https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/collection.json",
  "explore_button_text": "🚀 Explore the Zoo",
  "subscribe_url": "https://docs.google.com/forms/d/e/1FAIpQLSfQhTjXOuTXZNtalprbsXMPd4ct2ydiMhlPc2lhcs6WY4yo0w/viewform?embedded=true",
  "contact_form_url": "https://oeway.typeform.com/to/K3j2tJt7",
  "contribute_url": "https://bioimage.io/docs/#/contribute_models/README",
  "join_partners_url": "https://bioimage.io/docs/community_partners/README.md",
  "about_url": null,
  "footer": [
    { "label": "Question",
      "tooltip": "Ask a question on image.sc forum",
      "logo": "/static/img/imagesc-logo.png", 
      "url": "https://forum.image.sc/tag/bioimageio"
    },
    { "label": "Feedback Form",
      "tooltip": "Give us some feedback through this Google Form",
      "logo": "/static/img/feedback-icon.png", 
      "url": "https://forms.gle/CA1yK4pUKMqBPtso8"
    },
    { "label": "Source Code",
      "tooltip": "Github Repository",
      "logo": "/static/img/github.png",
      "url": "https://github.com/bioimage-io/bioimage.io"
    },
    { "label": "Contact Us",
      "tooltip": "Send us a message",
      "logo": "/static/img/contact.png",
      "url": "https://oeway.typeform.com/to/K3j2tJt7"
    },
    { "label": "AI4Life",
      "tooltip": "We receive funding through the AI4Life project with support from the European Union’s Horizon Europe research and innovation programme under grant agreement number 101057970",
      "logo": "/static/img/AI4Life-logo-giraffe.png", 
      "url": "https://ai4life.eurobioimaging.eu/"
    },
    { "label": "Deploys By Netlify",
      "tooltip": "This site is powered by Netlify",
      "logo": "https://www.netlify.com/img/global/badges/netlify-color-accent.svg",
      "url": "https://www.netlify.com"
    }
  ],
  "rdf_root_repo": "bioimage-io/collection-bioimage-io",
  "enable_comment": true,
  "splash_title": "BioImage Model Zoo",
  "splash_subtitle": "Advanced AI models in one-click",
  "splash_feature_list": [
    "Integrated with Fiji, ilastik, ImJoy and more",
    "Try model instantly with BioEngine",
    "Link models to datasets and applications"
  ],
  "table_view": {
    "columns": ["name", "authors", "badges", "apps"]
  },
  "zenodo_config": {
    "enabled": true,
    "sandbox_client_id": "0Zb8YkwXBqt2zelL9WyorERRzJufdTJMgxxuibmQ",
    "production_client_id": "nO6VNWAiRjklxcVx0roedRnQncQTyEMRkTDzg6kd",
    "community": "bioimage-io",
    "use_sandbox": false
  },
  "attachment_table": {
    "columns": [
      {
        "field": "name",
        "label": "Name",
        "width": 80,
        "sortable": true
      },
      {
        "field": "description",
        "label": "Description",
        "width": 100,
        "max_length": 100,
        "sortable": true
      },
      {
        "field": "timestamp",
        "label": "Timestamp",
        "class": "tag is-success",
        "sortable": true
      },
      {
        "field": "source",
        "label": "Source",
        "type": "url",
        "text": "open",
        "class": "button is-small"
      },
      {
        "field": "download_url",
        "label": "Download",
        "type": "url",
        "text": "Download",
        "class": "button is-small"
      }
    ],
    "detailed": true,
    "detailed_image": null,
    "detailed_body": "description"
  },
  "show_footnote": true,
  "footnote1": "BioImage.IO -- a collaborative effort to bring AI models to the bioimaging community, powered by the AI4Life consortium",
  "footnote2": "AI4Life receives funding from the European Union’s Horizon Europe research and innovation programme under grant agreement number 101057970. Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.",
  "footnote_image": "/static/img/EuropeanFlag-Funded by the EU-POS.jpg",
  "partners": [],
  "excluded_partners": ["bioimageio"],
  "excluded_tags": ["bioimage.io", "bioimage.io:model", "bioimage.io:application", "bioimage.io:workflow", "bioimage.io:notebook", "bioimage.io:dataset", "zenodo"],
  "resource_categories": [
    {
      "name": "models",
      "type": "model",
      "description": "list ai models",
      "outline_color": "rgb(36 0 236)",
      "tag_categories": {
        "modality": [
          "electron-microscopy",
          "cryo-electron-microscopy",
          "fluorescence-light-microscopy",
          "transmission-light-microscopy",
          "super-resolution-microscopy",
          "x-ray-microscopy",
          "force-microscopy",
          "high-content-imaging",
          "whole-slide-imaging",
          "other"],
        "dims": [
          "2d", "3d", "2d-t", "3d-t"],

        "content": [
          "cells",
          "nuclei",
          "extracellular-vesicles",
          "tissue",
          "plant",
          "mitochondria",
          "vasculature",
          "cell-membrane",
          "brain",
          "whole-organism"
        ],
        "framework": ["tensorflow", "pytorch", "tensorflow.js"],
        "software": ["ilastik", "imagej", "fiji", "imjoy", "deepimagej", "napari"],
        "method": [
          "stardist",
          "cellpose",
          "yolo",
          "care",
          "n2v",
          "denoiseg"
        ],
        "network": [
          "unet",
          "densenet",
          "resnet",
          "inception",
          "shufflenet"
        ],
        "task": [
          "semantic-segmentation",
          "instance-segmentation",
          "object-detection",
          "image-classification",
          "denoising",
          "image-restoration",
          "image-reconstruction",
          "in-silico-labeling"
        ]
      }
    },
    {
      "name": "applications",
      "type": "application",
      "outline_color": "rgb(83 230 7)",
      "common_tags": ["software", "notebook", "bioengine", "workflow", "macro"],
      "description": "list software, web apps, notebooks and utility tools"
    },
    {
      "name": "datasets",
      "type": "dataset",
      "outline_color": "rgb(236 0 185)",
      "description": "list datasets"
    }
  ]
}