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htc_x101_64x4d_fpn_dconv_10epoch.py
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dataset_type = 'CocoDataset'
data_root = '/workspace/data/Chula-ParasiteEgg-11/'
img_norm_cfg = dict(
mean=[123.675, 116.28, 103.53], std=[58.395, 57.12, 57.375], to_rgb=True)
train_pipeline = [
dict(type='LoadImageFromFile'),
dict(type='LoadAnnotations', with_bbox=True, with_mask=True),
dict(
type='Resize',
img_scale=[(1600, 400), (1600, 1400)],
multiscale_mode='range',
keep_ratio=True),
dict(type='RandomFlip', flip_ratio=0.5),
dict(
type='Normalize',
mean=[123.675, 116.28, 103.53],
std=[58.395, 57.12, 57.375],
to_rgb=True),
dict(type='Pad', size_divisor=32),
dict(type='DefaultFormatBundle'),
dict(type='Collect', keys=['img', 'gt_bboxes', 'gt_labels', 'gt_masks'])
]
test_pipeline = [
dict(type='LoadImageFromFile'),
dict(
type='MultiScaleFlipAug',
img_scale=(1333, 800),
flip=False,
transforms=[
dict(type='Resize', keep_ratio=True),
dict(type='RandomFlip', flip_ratio=0.5),
dict(
type='Normalize',
mean=[123.675, 116.28, 103.53],
std=[58.395, 57.12, 57.375],
to_rgb=True),
dict(type='Pad', size_divisor=32),
dict(type='ImageToTensor', keys=['img']),
dict(type='Collect', keys=['img'])
])
]
data = dict(
samples_per_gpu=4,
workers_per_gpu=8,
train=dict(
type='CocoDataset',
ann_file=[
'/workspace/data/Chula-ParasiteEgg-11/labels_train_with_masks.json',
'/workspace/data/Chula-ParasiteEgg-11/labels_val_with_masks.json',
'/workspace/data/Chula-ParasiteEgg-11/labels_test_fusion_929_with_masks.json'
],
img_prefix=[
'/workspace/data/Chula-ParasiteEgg-11/train/',
'/workspace/data/Chula-ParasiteEgg-11/val/',
'/workspace/data/Chula-ParasiteEgg-11/test/data/'
],
pipeline=[
dict(type='LoadImageFromFile'),
dict(type='LoadAnnotations', with_bbox=True, with_mask=True),
dict(
type='Resize',
img_scale=[(1600, 400), (1600, 1400)],
multiscale_mode='range',
keep_ratio=True),
dict(type='RandomFlip', flip_ratio=0.5),
dict(
type='Normalize',
mean=[123.675, 116.28, 103.53],
std=[58.395, 57.12, 57.375],
to_rgb=True),
dict(type='Pad', size_divisor=32),
dict(type='DefaultFormatBundle'),
dict(
type='Collect',
keys=['img', 'gt_bboxes', 'gt_labels', 'gt_masks'])
],
classes=('Ascaris lumbricoides', 'Capillaria philippinensis',
'Enterobius vermicularis', 'Fasciolopsis buski',
'Hookworm egg', 'Hymenolepis diminuta', 'Hymenolepis nana',
'Opisthorchis viverrine', 'Paragonimus spp',
'Taenia spp. egg', 'Trichuris trichiura')),
val=dict(
type='CocoDataset',
ann_file=
'/workspace/data/Chula-ParasiteEgg-11/labels_val_with_masks.json',
img_prefix='/workspace/data/Chula-ParasiteEgg-11/val/',
pipeline=[
dict(type='LoadImageFromFile'),
dict(
type='MultiScaleFlipAug',
img_scale=(1333, 800),
flip=False,
transforms=[
dict(type='Resize', keep_ratio=True),
dict(type='RandomFlip', flip_ratio=0.5),
dict(
type='Normalize',
mean=[123.675, 116.28, 103.53],
std=[58.395, 57.12, 57.375],
to_rgb=True),
dict(type='Pad', size_divisor=32),
dict(type='ImageToTensor', keys=['img']),
dict(type='Collect', keys=['img'])
])
],
classes=('Ascaris lumbricoides', 'Capillaria philippinensis',
'Enterobius vermicularis', 'Fasciolopsis buski',
'Hookworm egg', 'Hymenolepis diminuta', 'Hymenolepis nana',
'Opisthorchis viverrine', 'Paragonimus spp',
'Taenia spp. egg', 'Trichuris trichiura')),
test=dict(
type='CocoDataset',
ann_file='/workspace/data/Chula-ParasiteEgg-11/labels_test.json',
img_prefix='/workspace/data/Chula-ParasiteEgg-11/test/data',
pipeline=[
dict(type='LoadImageFromFile'),
dict(
type='MultiScaleFlipAug',
img_scale=(1333, 800),
flip=False,
transforms=[
dict(type='Resize', keep_ratio=True),
dict(type='RandomFlip', flip_ratio=0.5),
dict(
type='Normalize',
mean=[123.675, 116.28, 103.53],
std=[58.395, 57.12, 57.375],
to_rgb=True),
dict(type='Pad', size_divisor=32),
dict(type='ImageToTensor', keys=['img']),
dict(type='Collect', keys=['img'])
])
],
classes=('Ascaris lumbricoides', 'Capillaria philippinensis',
'Enterobius vermicularis', 'Fasciolopsis buski',
'Hookworm egg', 'Hymenolepis diminuta', 'Hymenolepis nana',
'Opisthorchis viverrine', 'Paragonimus spp',
'Taenia spp. egg', 'Trichuris trichiura')))
evaluation = dict(metric=['bbox', 'segm'])
optimizer = dict(type='SGD', lr=0.02, momentum=0.9, weight_decay=0.0001)
optimizer_config = dict(grad_clip=None)
lr_config = dict(
policy='step',
warmup='linear',
warmup_iters=500,
warmup_ratio=0.001,
step=[7, 9])
runner = dict(type='EpochBasedRunner', max_epochs=10)
checkpoint_config = dict(interval=1)
log_config = dict(interval=50, hooks=[dict(type='TextLoggerHook')])
custom_hooks = [dict(type='NumClassCheckHook')]
dist_params = dict(backend='nccl')
log_level = 'INFO'
load_from = 'pretrained_models/htc_x101_64x4d_fpn_dconv_c3-c5_mstrain_400_1400_16x1_20e_coco_20200312-946fd751.pth'
resume_from = None
workflow = [('train', 1)]
opencv_num_threads = 0
mp_start_method = 'fork'
auto_scale_lr = dict(enable=False, base_batch_size=16)
model = dict(
type='HybridTaskCascade',
backbone=dict(
type='ResNeXt',
depth=101,
num_stages=4,
out_indices=(0, 1, 2, 3),
frozen_stages=1,
norm_cfg=dict(type='BN', requires_grad=True),
norm_eval=True,
style='pytorch',
init_cfg=dict(
type='Pretrained', checkpoint='open-mmlab://resnext101_64x4d'),
groups=64,
base_width=4,
dcn=dict(type='DCN', deform_groups=1, fallback_on_stride=False),
stage_with_dcn=(False, True, True, True)),
neck=dict(
type='FPN',
in_channels=[256, 512, 1024, 2048],
out_channels=256,
num_outs=5),
rpn_head=dict(
type='RPNHead',
in_channels=256,
feat_channels=256,
anchor_generator=dict(
type='AnchorGenerator',
scales=[8],
ratios=[0.5, 1.0, 2.0],
strides=[4, 8, 16, 32, 64]),
bbox_coder=dict(
type='DeltaXYWHBBoxCoder',
target_means=[0.0, 0.0, 0.0, 0.0],
target_stds=[1.0, 1.0, 1.0, 1.0]),
loss_cls=dict(
type='CrossEntropyLoss', use_sigmoid=True, loss_weight=1.0),
loss_bbox=dict(
type='SmoothL1Loss', beta=0.1111111111111111, loss_weight=1.0)),
roi_head=dict(
type='HybridTaskCascadeRoIHead',
interleaved=True,
mask_info_flow=True,
num_stages=3,
stage_loss_weights=[1, 0.5, 0.25],
bbox_roi_extractor=dict(
type='SingleRoIExtractor',
roi_layer=dict(type='RoIAlign', output_size=7, sampling_ratio=0),
out_channels=256,
featmap_strides=[4, 8, 16, 32]),
bbox_head=[
dict(
type='Shared2FCBBoxHead',
in_channels=256,
fc_out_channels=1024,
roi_feat_size=7,
num_classes=11,
bbox_coder=dict(
type='DeltaXYWHBBoxCoder',
target_means=[0.0, 0.0, 0.0, 0.0],
target_stds=[0.1, 0.1, 0.2, 0.2]),
reg_class_agnostic=True,
loss_cls=dict(
type='CrossEntropyLoss',
use_sigmoid=False,
loss_weight=1.0),
loss_bbox=dict(type='SmoothL1Loss', beta=1.0,
loss_weight=1.0)),
dict(
type='Shared2FCBBoxHead',
in_channels=256,
fc_out_channels=1024,
roi_feat_size=7,
num_classes=11,
bbox_coder=dict(
type='DeltaXYWHBBoxCoder',
target_means=[0.0, 0.0, 0.0, 0.0],
target_stds=[0.05, 0.05, 0.1, 0.1]),
reg_class_agnostic=True,
loss_cls=dict(
type='CrossEntropyLoss',
use_sigmoid=False,
loss_weight=1.0),
loss_bbox=dict(type='SmoothL1Loss', beta=1.0,
loss_weight=1.0)),
dict(
type='Shared2FCBBoxHead',
in_channels=256,
fc_out_channels=1024,
roi_feat_size=7,
num_classes=11,
bbox_coder=dict(
type='DeltaXYWHBBoxCoder',
target_means=[0.0, 0.0, 0.0, 0.0],
target_stds=[0.033, 0.033, 0.067, 0.067]),
reg_class_agnostic=True,
loss_cls=dict(
type='CrossEntropyLoss',
use_sigmoid=False,
loss_weight=1.0),
loss_bbox=dict(type='SmoothL1Loss', beta=1.0, loss_weight=1.0))
],
mask_roi_extractor=dict(
type='SingleRoIExtractor',
roi_layer=dict(type='RoIAlign', output_size=14, sampling_ratio=0),
out_channels=256,
featmap_strides=[4, 8, 16, 32]),
mask_head=[
dict(
type='HTCMaskHead',
with_conv_res=False,
num_convs=4,
in_channels=256,
conv_out_channels=256,
num_classes=11,
loss_mask=dict(
type='CrossEntropyLoss', use_mask=True, loss_weight=1.0)),
dict(
type='HTCMaskHead',
num_convs=4,
in_channels=256,
conv_out_channels=256,
num_classes=11,
loss_mask=dict(
type='CrossEntropyLoss', use_mask=True, loss_weight=1.0)),
dict(
type='HTCMaskHead',
num_convs=4,
in_channels=256,
conv_out_channels=256,
num_classes=11,
loss_mask=dict(
type='CrossEntropyLoss', use_mask=True, loss_weight=1.0))
]),
train_cfg=dict(
rpn=dict(
assigner=dict(
type='MaxIoUAssigner',
pos_iou_thr=0.7,
neg_iou_thr=0.3,
min_pos_iou=0.3,
ignore_iof_thr=-1),
sampler=dict(
type='RandomSampler',
num=256,
pos_fraction=0.5,
neg_pos_ub=-1,
add_gt_as_proposals=False),
allowed_border=0,
pos_weight=-1,
debug=False),
rpn_proposal=dict(
nms_pre=2000,
max_per_img=2000,
nms=dict(type='nms', iou_threshold=0.7),
min_bbox_size=0),
rcnn=[
dict(
assigner=dict(
type='MaxIoUAssigner',
pos_iou_thr=0.5,
neg_iou_thr=0.5,
min_pos_iou=0.5,
ignore_iof_thr=-1),
sampler=dict(
type='RandomSampler',
num=512,
pos_fraction=0.25,
neg_pos_ub=-1,
add_gt_as_proposals=True),
mask_size=28,
pos_weight=-1,
debug=False),
dict(
assigner=dict(
type='MaxIoUAssigner',
pos_iou_thr=0.6,
neg_iou_thr=0.6,
min_pos_iou=0.6,
ignore_iof_thr=-1),
sampler=dict(
type='RandomSampler',
num=512,
pos_fraction=0.25,
neg_pos_ub=-1,
add_gt_as_proposals=True),
mask_size=28,
pos_weight=-1,
debug=False),
dict(
assigner=dict(
type='MaxIoUAssigner',
pos_iou_thr=0.7,
neg_iou_thr=0.7,
min_pos_iou=0.7,
ignore_iof_thr=-1),
sampler=dict(
type='RandomSampler',
num=512,
pos_fraction=0.25,
neg_pos_ub=-1,
add_gt_as_proposals=True),
mask_size=28,
pos_weight=-1,
debug=False)
]),
test_cfg=dict(
rpn=dict(
nms_pre=1000,
max_per_img=1000,
nms=dict(type='nms', iou_threshold=0.7),
min_bbox_size=0),
rcnn=dict(
score_thr=0.001,
nms=dict(type='nms', iou_threshold=0.5),
max_per_img=100,
mask_thr_binary=0.5)))
classes = ('Ascaris lumbricoides', 'Capillaria philippinensis',
'Enterobius vermicularis', 'Fasciolopsis buski', 'Hookworm egg',
'Hymenolepis diminuta', 'Hymenolepis nana',
'Opisthorchis viverrine', 'Paragonimus spp', 'Taenia spp. egg',
'Trichuris trichiura')
fp16 = dict(loss_scale=512.0)
work_dir = './work_dirs/htc_x101_64x4d_fpn_dconv_c3-c5_mstrain_400_1400_16x1_10e_chulacell'
auto_resume = False
gpu_ids = range(0, 2)